UFO04320.5prime Sequence
1096 bp (979 high quality bases) assembled on 2009-02-18
> UFO04320.5prime
CAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGGTTCTGCAC
AATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGATCGCCCAC
CTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCAGGAAGGTG
ACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAACAGCAGCCC
CGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTACGCGGAGAT
TGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGTGGATCGTC
CTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCTGCCTGGTT
CGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTGAGCATCTG
GGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGATAGGAGAC
AACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCTTCGGATCC
CCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTCTGCACCAA
CAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTACGCTGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGCACCTTGTCGCT
GCGTATATATTTGCCCATGTGAAAACGGGGCGAGAGTGTCATATGGCCAC
GTTTAAATCAACTGTGAACTCACCAAGGATGCTGAAACGAAAAACAATCT
CATAACCTTTAGAAAAGCCAGTTCCGTACCGCCACTGGCATATATT
UFO04320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15529-RB | 1393 | CG15529-RB | 122..710 | 8..596 | 2945 | 100 | Plus |
| CG15529-RA | 965 | CG15529-RA | 122..710 | 8..596 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30152642..30153016 | 222..596 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 30152180..30152394 | 8..222 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 141..185 | 126 | 75.6 | Plus |
UFO04320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:39 Download gff for
UFO04320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 112..712 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:15 Download gff for
UFO04320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 115..715 | 1..603 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:54 Download gff for
UFO04320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15529-RA | 115..715 | 1..603 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:54 Download gff for
UFO04320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30152173..30152394 | 1..222 | 98 | -> | Plus |
| 3R | 30152643..30153021 | 223..603 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:15 Download gff for
UFO04320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25977895..25978116 | 1..222 | 98 | -> | Plus |
| arm_3R | 25978365..25978743 | 223..603 | 99 | == | Plus |
