UFO04322.5prime Sequence
1109 bp (997 high quality bases) assembled on 2009-02-18
> UFO04322.5prime
CAGTCGACATGTCGGCCGCAGCTAGTAATTCCAGCAAGATGATGACATCG
CCCGGCGATATGTTTACCCTGGAGAATCCTGTCTTTTGCTGCTATCTTTT
TTGGTCCACAGTCCTGGTGGTGAAGATGCTGCTCATGTCGCTGCTAACGG
CCGTTCAGCGTTTCCGGTATAAGATCTTTCCCAACCAGGAGGATCTGTTC
TTCAAGAATCTTGAAGTGCAATTCGATGATCCGCATGTGGAGCGGGTCAG
AAGGGCCCATCGCAATGACATGGAGAACATTCTGCCGTATTTTATCATGT
CCTTGATTTATATCAGTACCAATCCGAATGCCGATGTGGCCTGCATACTG
TTCCGAGTGGCCTCCGTGGCCAGGATCATACACACTCTGGTTTACGCCGT
TTATCCGGTGCCGCAGCCATCGAGGATTCTAGCCTTCGCCACCATGCTAC
TGATCACCTTCTACATGGCCGCCGTGGTCGCCCTGCGTACCCTAAGCTTT
ATAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGCAATAGCCAAG
TTCCACGTACACGCCACATCTGCCAATAATTGTGTAGAACTGCGAATCGT
CTGCATTCACTCCAGAAGCGATGAAAACGTTCAGTTGCCTCATGAAACGG
TGTTACAAG
UFO04322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33178-RC | 825 | CG33178-RC | 50..545 | 8..503 | 2480 | 100 | Plus |
| CG33178-RA | 585 | CG33178-RA | 50..545 | 8..503 | 2480 | 100 | Plus |
| CG33178-RB | 621 | CG33178-RB | 251..581 | 173..503 | 1655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15083486..15083737 | 252..503 | 1260 | 100 | Plus |
| X | 23542271 | X | 15082876..15083041 | 8..173 | 830 | 100 | Plus |
| X | 23542271 | X | 15083255..15083337 | 172..254 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:14 has no hits.
UFO04322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:45 Download gff for
UFO04322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 1..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:43 Download gff for
UFO04322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 1..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:08 Download gff for
UFO04322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33178-RA | 43..549 | 1..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:08 Download gff for
UFO04322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15083257..15083336 | 174..253 | 100 | -> | Plus |
| X | 15083488..15083737 | 254..503 | 100 | == | Plus |
| X | 15082869..15083041 | 1..173 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:43 Download gff for
UFO04322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14977290..14977369 | 174..253 | 100 | -> | Plus |
| arm_X | 14976902..14977074 | 1..173 | 98 | -> | Plus |
| arm_X | 14977521..14977770 | 254..503 | 100 | == | Plus |
