UFO04325.5prime Sequence
826 bp (64 high quality bases) assembled on 2009-02-18
> UFO04325.5prime
CAATCCACATGCCGATACTATATAGTGTGATATCGCGGGGCACCACAGTG
CTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTGACGGAGCA
CATTCTCGGACGGATCGGGGTGCATAACCACAAGATGACCTACCCACACG
GAGACGACCTGATCCACTACACCTGCGAGAACAAGCTGGTCTACTTGTGC
ATCACCGACAACGAGTTCAAACGGTCGCGGGCCTTCCTCTTCTTGGCGGA
TATCAAGCAAAAGTTTATCCAGACTTACGGCCTACAGGTGGCCACCGCCT
TCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCCAGCAGATG
GTCTATTTCATTCAGTCCCGGGAGGTGGACACCATTTCGCGAGTACATGG
TCAGATTGACGAGCTTAAAGACATTATGGTTAAAAATATTGACAGCTTGC
GGGATCGCGGCGAGAAACTACAGCTGCTCGTCGACAAGACCGAAAACTTG
AGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTGGCTCGTCA
AATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCTGGAGATAA
CCTTCATCGTTTACGTGATTGTGAGCTTGGCCAGTGGTGGTCTCGCTTGG
CAGACCTGTGTTGCATGCTTTCTAGATTATTCGTTTGGCGCGCGGGCCCA
GTGATATGGTCATAAATTAATCATAAATCATAATCATAATCACACCTAGC
CTAGGAGATTCAGGTCATGACTAGTGCTTGGATTCGCTCCAAATAGCAAC
GCACGGCTGCCACCCATCGCTCTGAA
UFO04325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 8..662 | 3005 | 97.3 | Plus |
| Vamp7-RA | 1090 | CG1599-RA | 319..973 | 8..662 | 3005 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9841540..9841768 | 441..213 | 1070 | 97.8 | Minus |
| 2R | 25286936 | 2R | 9841846..9842051 | 213..8 | 940 | 97.1 | Minus |
| 2R | 25286936 | 2R | 9841197..9841349 | 662..510 | 690 | 96.7 | Minus |
| 2R | 25286936 | 2R | 9841408..9841476 | 509..441 | 315 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:36 has no hits.
UFO04325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:34 Download gff for
UFO04325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1599-RA | 327..984 | 1..662 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:50 Download gff for
UFO04325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 316..973 | 1..662 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:25 Download gff for
UFO04325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vamp7-RA | 316..973 | 1..662 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:25 Download gff for
UFO04325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9841186..9841349 | 510..669 | 93 | <- | Minus |
| 2R | 9841408..9841475 | 442..509 | 97 | <- | Minus |
| 2R | 9841540..9841768 | 213..441 | 97 | <- | Minus |
| 2R | 9841847..9842054 | 1..212 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:50 Download gff for
UFO04325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5729352..5729559 | 1..212 | 95 | | Minus |
| arm_2R | 5728691..5728854 | 510..669 | 93 | <- | Minus |
| arm_2R | 5728913..5728980 | 442..509 | 97 | <- | Minus |
| arm_2R | 5729045..5729273 | 213..441 | 97 | <- | Minus |
