UFO04328.5prime Sequence
1142 bp (1037 high quality bases) assembled on 2009-02-18
> UFO04328.5prime
CAGTCGACATGTCGAAATTTCTGTCCCAAGCCGCCCTAAATACGCTGCGA
AACACGCGCCTGGGGTCGCGGCAACTGGTGCGCAGTTTTAAGGGCATCTC
CAACACGCGTAACCATCGCATACCGGCTCACCAGGAATCGGGATGTGGTC
ACTCAGTGGGATGCGGGCTGCTAGAGTTGCGGATGCCGGTGGCGTGCAGG
AGGAGCATGTTCATCCAGACGCAGGACACTCCGAATCCGGAGAGCTTGAA
GTTCCTGCCCGGCGTGGACGTCCTGGGAAAGGGGAACACGTACGACTTCC
CCAACGGAACCACCGCCCACAACAGTCCTTTGGCCAAATTGCTGTTCCGC
GTGGAGGGCGTTAAGGGCGTGTTCTTTGGCGCCGACTTCGTCACCATCTC
GAAGCAGGAGGGCGCCGAGTGGAGCCTGATTAAGCCAGAGGTGTTTGCCG
TCATAATGGACTTCTTTGCCAGCGGCTTACCAGTTCTCAACGATGCCCAG
CCCAATGCGGACACCGAGATCCTCGAGGACGACGACGAGACGGTAATGAT
GATCAAGGAGCTGCTGGACACGCGCATCCGACCCACCGTCCAGGAGGACG
GCGGCGACATCGTCTTCATGGGCTACGAGGGCGGCGTGGTCAAGCTAAAG
ATGCAAGGCTCCTGCTCCTCCTGTCCCAGCTCCATTGTGACGCTGAAGAA
CGGAGTGCAGAACATGCTGCAATTCTACATACCGGAGGTGGAGTCCGTTG
AGCAGGTCTTCGACGAGGCGGACAGGATGATCGAGAGCGAGTTTGAGCGC
TTCGAAAAGAACCTCAAGACGCTCAAGCAGCACGAGCCCAGTGGCGGCGG
TCCCCATGCAAGCTTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATATCATAATCATAATCATATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCAACAATAAAAACGCCCGCC
GCAACCGAGCGTTTCTGAACAATCCGGATGGAGTTCTGAGGTCATTTATG
GGATCTTTTCACAGGGTCCCAGCGACTCGATTCAATTACCGCCCCGCCTT
GTCCCTCATTGCGAGTTACTGTTTGATTTCTTAGCATTCTGC
UFO04328.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33502-RA | 1060 | CG33502-RA | 58..906 | 9..857 | 4230 | 99.9 | Plus |
| CG32857-RA | 1059 | CG32857-RA | 57..905 | 9..857 | 4230 | 99.9 | Plus |
| CG32500-RA | 1084 | CG32500-RA | 82..930 | 9..857 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21609511..21610035 | 857..333 | 2610 | 99.8 | Minus |
| X | 23542271 | X | 21615603..21616127 | 857..333 | 2610 | 99.8 | Minus |
| X | 23542271 | X | 21621695..21622219 | 857..333 | 2610 | 99.8 | Minus |
| X | 23542271 | X | 21611086..21611342 | 333..77 | 1285 | 100 | Minus |
| X | 23542271 | X | 21617178..21617434 | 333..77 | 1285 | 100 | Minus |
| X | 23542271 | X | 21623286..21623542 | 333..77 | 1285 | 100 | Minus |
| X | 23542271 | X | 21611401..21611469 | 77..9 | 345 | 100 | Minus |
| X | 23542271 | X | 21617493..21617561 | 77..9 | 345 | 100 | Minus |
| X | 23542271 | X | 21623601..21623669 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:27 has no hits.
UFO04328.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:33 Download gff for
UFO04328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32857-RA | 36..884 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:32 Download gff for
UFO04328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:58 Download gff for
UFO04328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32500-RA | 82..930 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:58 Download gff for
UFO04328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21609511..21610034 | 334..857 | 99 | <- | Minus |
| X | 21611086..21611342 | 77..333 | 100 | <- | Minus |
| X | 21611402..21611469 | 9..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:32 Download gff for
UFO04328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21480538..21481061 | 334..857 | 99 | <- | Minus |
| arm_X | 21482113..21482369 | 77..333 | 100 | <- | Minus |
| arm_X | 21482429..21482496 | 9..76 | 100 | | Minus |
