UFO04329.5prime Sequence
1155 bp (1017 high quality bases) assembled on 2009-02-18
> UFO04329.5prime
CAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGACGCCTGCC
CAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGATGAGTATTA
TACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAATTTGGCCA
ATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGGCGGACGCC
TTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTATTAAAAGT
GCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAACGGCTGCCA
AATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTGTGCGCACT
GATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTACCAATTACT
GGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCCTGCGGTGC
TAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAACGCATCGTT
AAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACAGAGGTTGT
CCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCAGCAAAGCA
GTGAAGCAGGTGCAAGTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGACCGTGAATC
GCCAGCGGCATCAGCACTTGTCGCTTGCGTATAATATTGCCCATGGTGAA
ACGGGGCGAAGAGTTGTCATATGGTCACGTTTAAATCAAACTGTGAAACT
CACCAGGATGGCTGAAACGAAAAACCATTTCCATAACCTTAGGAAATAGC
CAGTTTCACGGTACAGCCCATCTTGCAATATGTTGAACTGCGAATGCCTG
GATTA
UFO04329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14881-RB | 1054 | CG14881-RB | 67..678 | 9..620 | 3060 | 100 | Plus |
| CG14881-RA | 966 | CG14881-RA | 67..555 | 9..497 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16435355..16435690 | 285..620 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 16435133..16435301 | 117..285 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 16434965..16435073 | 9..117 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2464..2520 | 1020..965 | 120 | 70.2 | Minus |
UFO04329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:33 Download gff for
UFO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 41..657 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:46 Download gff for
UFO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 67..683 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:55 Download gff for
UFO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14881-RB | 67..683 | 9..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:55 Download gff for
UFO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16435134..16435301 | 118..285 | 100 | -> | Plus |
| 3R | 16434965..16435073 | 9..117 | 100 | -> | Plus |
| 3R | 16435356..16435695 | 286..626 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:46 Download gff for
UFO04329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12260687..12260795 | 9..117 | 100 | -> | Plus |
| arm_3R | 12260856..12261023 | 118..285 | 100 | -> | Plus |
| arm_3R | 12261078..12261417 | 286..626 | 99 | == | Plus |
