UFO04332.5prime Sequence
1097 bp (1009 high quality bases) assembled on 2009-02-18
> UFO04332.5prime
CAGTCGACATGAGAGCTGCGCCATTCGGATCGTGGTACTGGCTGGGATTG
GGATTGGGCCTGCTTCTGGCCATCGAGTGCGGCGTGGTTTCCGCCAAGCG
TTTCCTGCGCTGTGAACTGGCCCGCAAGTTGCTCGATCAGCATGGTTTCG
AACGCAGTCTGCTCTCGAATTGGATTTGTTTGCTAGAGCACGAAAGCGAT
CTGGATACCGGCAGGATTACAACCAATGCGAATGGATCTCGGAACTATGG
GCTGTTCCAAATCAATGGCAGGTTTTGTCAGGAGGGAAGGCGTGGCGGCA
TTTGCAATGCCAAGTGCGAAGATTTTTTGGACGAAAATTTAAGGGAGTCG
GTTACTTGCGCCAAGCGCATCCAAACCTCGGATGGTTTTCGTCATTGGGC
GGGATGGCAACGATATTGCCGAAACGCCCAAAATCTGCCTAATCTTAAGG
TTATCTGTGGGATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGCTGAGACGAAAAACATATTCCTCAATAAACCCT
TTAGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTGGCGAATATA
TGTGTAGAACTGCCGGAAATCGTCTGCTATTCACTCCGAGCGATGAAACG
TTTCAGTGCTCATGAACGGTGTAACAGTAAACCTATTCATATACACA
UFO04332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16756-RA | 521 | CG16756-RA | 12..467 | 9..464 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5427528..5427691 | 9..172 | 820 | 100 | Plus |
| X | 23542271 | X | 5427806..5427959 | 172..325 | 755 | 99.4 | Plus |
| X | 23542271 | X | 5428019..5428163 | 320..464 | 710 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:41 has no hits.
UFO04332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:31 Download gff for
UFO04332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16756-RA | 2..467 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:48 Download gff for
UFO04332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16756-RA | 2..467 | 1..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:43 Download gff for
UFO04332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16756-RA | 2..467 | 1..464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:43 Download gff for
UFO04332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5427806..5427955 | 172..321 | 100 | -> | Plus |
| X | 5428021..5428163 | 322..464 | 99 | == | Plus |
| X | 5427518..5427690 | 1..171 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:48 Download gff for
UFO04332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5321551..5321723 | 1..171 | 98 | -> | Plus |
| arm_X | 5321839..5321988 | 172..321 | 100 | -> | Plus |
| arm_X | 5322054..5322196 | 322..464 | 99 | == | Plus |
