UFO04334.5prime Sequence
1141 bp (1017 high quality bases) assembled on 2009-02-18
> UFO04334.5prime
CAGTCGACATGTCCAACGTTCCAATTGTAGGCGGGATCAGTCAGCTGGAG
GGGAATGAGAGGAAGGAGGCTCTGGAACTCCTCGATGCCACCCTCGCACA
GTTGGCCAACGGAGATGGACCCAGCTACAAGGCACTTAATGTAACCTCTG
TGACGGGTCAGGTCGTAGCTGGAAGACTCAACACCTACGAGGTGCAGCTG
GACAATGGATCCGAGATAAAACAGGGCACTGTGCAGATCTGGAGTCGCGC
ATGGCTAAAGGAGAACGGCACCAACATCAAGATCAAGTTCCCGGGTGAGG
ACGAACTGGACCACACCTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGA
GCGATGAAAACGTTTCAGTTTGCTCATGGAAACGTGTAACAAGGTGAACA
CTATCCCATATCACCAGCTCACCGTCTTTCATGCCATACGAAATTCCGAT
GGGCATTCATCAAGCGGGCAGAATGTGAATAAAGCCGATAAACTTGTTGC
TTTATTTTTCTTACGGTCTTAAAAAGCCGTAATATCAGCTGACGCTTGTT
TAAGTACTTGAGCACACTGACTGAATGCCTCAAATGTTCTC
UFO04334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8066-RB | 703 | CG8066-RB | 62..374 | 8..320 | 1565 | 100 | Plus |
| CG8066-RA | 1173 | CG8066-RA | 62..374 | 8..320 | 1565 | 100 | Plus |
| Cys-RA | 484 | CG8050-RA | 118..414 | 27..320 | 860 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14568410..14568599 | 320..131 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 14568663..14568786 | 131..8 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 14569173..14569365 | 320..131 | 525 | 86 | Minus |
| 3R | 32079331 | 3R | 14569423..14569527 | 131..27 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:12 has no hits.
UFO04334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:38 Download gff for
UFO04334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 19..347 | 1..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:00 Download gff for
UFO04334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 56..384 | 1..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:20 Download gff for
UFO04334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8066-RA | 56..384 | 1..329 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:20 Download gff for
UFO04334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14568410..14568599 | 131..320 | 100 | <- | Minus |
| 3R | 14568664..14568792 | 1..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:00 Download gff for
UFO04334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10394132..10394321 | 131..320 | 100 | <- | Minus |
| arm_3R | 10394386..10394514 | 1..130 | 97 | | Minus |
