UFO04336.5prime Sequence
1072 bp (1019 high quality bases) assembled on 2009-02-18
> UFO04336.5prime
CAGTCGACATGGCAACGGATGTGGAGCCGGCGGCGAATACGGCGGACAAG
TTCTCCGCCAACGCGGAGGAGCTAGAGGGCTACTATCTGATGCTGGAGGC
GGGAAATATTCCGGAACTGCAATGGCAATTTCCGGGACGCAGGGCTCCAT
CGCCGGAGGCGGGATCTGGCGGCAATAGCAAGGAACTCGAACAGGCCACC
GACGCCATTGAGCAGGAACCGCAGAAGGCCAACGACTTTGATTTCAGCGA
CGATGTGGCCCCCACCCAGATGCGCGTCCGCAGCCAGACGTCCACGCCCA
AGTCGGCCAAAAAGAAGACGGCCAACTTCGCCGGCGTCATGGAGACGCTG
AAGAAGAAGAATGCCGAGAGCTCAGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACAT
CTTGCGATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCCCTCAG
GAGCGATGAAACGTTTCAGTTTGCTCATGGAAACGTGTAACAAGGTGAAC
ACTATCCCATATCACAGCTCACCGTCTTTCATTGCCATACGAAATTTCGG
ATGGAGCATCATCCAGGCGGGC
UFO04336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pa1-RA | 1628 | CG11750-RA | 94..459 | 9..374 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11359329..11359537 | 9..217 | 1045 | 100 | Plus |
| X | 23542271 | X | 11359604..11359760 | 218..374 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:52 has no hits.
UFO04336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:36 Download gff for
UFO04336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11750-RA | 93..462 | 9..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:53 Download gff for
UFO04336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pa1-RA | 94..463 | 9..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:07 Download gff for
UFO04336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pa1-RA | 94..463 | 9..380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:07 Download gff for
UFO04336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11359329..11359537 | 9..217 | 100 | -> | Plus |
| X | 11359604..11359760 | 218..374 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:53 Download gff for
UFO04336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11253362..11253570 | 9..217 | 100 | -> | Plus |
| arm_X | 11253637..11253793 | 218..374 | 100 | == | Plus |
