UFO04337.5prime Sequence
1095 bp (997 high quality bases) assembled on 2009-02-18
> UFO04337.5prime
CAGTCGACATGTACAACAACGGGGCCAGGGGCTTCTCCATTCACGACGCC
TTCGAGGAGGAGACCGACGAGGCGATACGCGTCTATGGCTCCACCGTGAT
ATCCACGCCCATGAGAGGCAAGCAAGGTCGCTCCACCGAAGACGTCTCCA
TCCGGATTCAGGACCCCAAGGGCTACAACAAGTATGCCGAGGACACAACG
TCCCGGGACAGCGACTCGCTCATCCAGGAGTACGGCAACCTGCCCACGGA
GGAGACCAACACATACTGCTGGCGGCATCCCAAGGTGCGTGAGAACTGGC
GCACAGTGCTGGCCGCCTTTACGCTCCTGGTCGTGGGCACGGGCCTCTTT
GTGATGGGCACCTTTGCCATCGCGGATCCGCAGAACACGTCGCAGGGAGT
CGTGTTCTTCGTAGCGGGACTCATCTGCTTCATACCCGGGGCCTATCACG
TCGTGTACATCTGGCTGGCAGCCAAAGGATATCGAGGGTTCGACTTCTAT
CACCTGCCGCTGTTCACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGA
AAACGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAATCAAACTGTGAA
ACTCACCCAGGATGCTGAACGAAAACATATCTCATAACCCTTTAGGAATA
GCAGGTTCACGTACACGCCACATCTGCGATTATTGTGTAGACTGCGAAAT
CGTCTGTAATTCACTCGACGATGAACCGTTTCATTTTGCCATGAA
UFO04337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12025-RC | 2839 | CG12025-RC | 328..837 | 9..518 | 2550 | 100 | Plus |
| CG12025-RB | 1992 | CG12025-RB | 328..837 | 9..518 | 2550 | 100 | Plus |
| CG12025-RA | 1211 | CG12025-RA | 328..837 | 9..518 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1867135..1867489 | 164..518 | 1760 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1865757..1865918 | 9..170 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:17 has no hits.
UFO04337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:06 Download gff for
UFO04337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12025-RA | 319..841 | 1..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:49 Download gff for
UFO04337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12025-RA | 320..842 | 1..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:49 Download gff for
UFO04337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12025-RA | 320..842 | 1..524 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:49 Download gff for
UFO04337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1865749..1865917 | 1..169 | 97 | -> | Plus |
| 3L | 1867141..1867489 | 170..518 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:49 Download gff for
UFO04337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1865749..1865917 | 1..169 | 97 | -> | Plus |
| arm_3L | 1867141..1867489 | 170..518 | 100 | == | Plus |
