UFO04340.5prime Sequence
1110 bp (991 high quality bases) assembled on 2009-02-18
> UFO04340.5prime
CAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATGAGACCGGC
AAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAGGAGACGGT
CCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATGCCGGGATA
TGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGACAAATAAC
CAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAATCCATTCG
CAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCATGTCCTGA
TAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCAAGGATGGC
TTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTGCTCACCCA
CTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCATCGTGAACG
TTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCGACCTAAAC
AGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGCAAGCTGGC
CAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGGAACGGGGG
TCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGCTGTCGAGG
AATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTCAAGCCCCT
CCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGACCACTCTCT
ACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCTACTTTAGC
GACTGCCAGCCAAGGAAGTGTCCGCAGCTGCCCAGGACGACAGACTGGAA
AGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAATTCAACAAAG
TGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGGCCAGGTAAGT
GGTCATAATCTATAATCATATCTTATCATATTCACAACTAGCTCAAGAGA
TCTTGGTCATGATGATGCTTGGAATCTCCACAATAAAAACGCCCGGCGGA
ACCGAAGTTCTGACAATCTAAAGGGAGTCTGAGGGCTATATGGACACTAC
AGGAGTCAGC
UFO04340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2065-RB | 1233 | CG2065-RB | 184..1085 | 7..905 | 4420 | 99.6 | Plus |
CG2065-RA | 1204 | CG2065-RA | 155..1056 | 7..905 | 4420 | 99.6 | Plus |
CG2064-RA | 1210 | CG2064-RA | 195..844 | 7..656 | 1270 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7664573..7664835 | 421..683 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 7664038..7664296 | 7..265 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 7664896..7665111 | 683..896 | 980 | 99.1 | Plus |
2R | 25286936 | 2R | 7664352..7664509 | 265..422 | 790 | 100 | Plus |
2R | 25286936 | 2R | 7666151..7666400 | 7..256 | 710 | 85.6 | Plus |
2R | 25286936 | 2R | 7655578..7655712 | 9..143 | 435 | 88.1 | Plus |
2R | 25286936 | 2R | 7662173..7662429 | 9..265 | 340 | 75.5 | Plus |
2R | 25286936 | 2R | 7666475..7666630 | 267..422 | 315 | 80.1 | Plus |
2R | 25286936 | 2R | 7666792..7666920 | 528..656 | 300 | 82.2 | Plus |
X | 23542271 | X | 6342357..6342458 | 48..149 | 255 | 83.3 | Plus |
2R | 25286936 | 2R | 7657419..7657555 | 9..145 | 250 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:54:54 has no hits.
UFO04340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:04 Download gff for
UFO04340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 151..1061 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:40 Download gff for
UFO04340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 151..1061 | 1..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:33 Download gff for
UFO04340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2065-RA | 151..1061 | 1..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:33 Download gff for
UFO04340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7664896..7665111 | 683..896 | 99 | == | Plus |
2R | 7664034..7664296 | 1..265 | 98 | -> | Plus |
2R | 7664353..7664509 | 266..422 | 100 | -> | Plus |
2R | 7664575..7664834 | 423..682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:40 Download gff for
UFO04340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3551539..3551801 | 1..265 | 98 | -> | Plus |
arm_2R | 3551858..3552014 | 266..422 | 100 | -> | Plus |
arm_2R | 3552080..3552339 | 423..682 | 100 | -> | Plus |
arm_2R | 3552401..3552616 | 683..896 | 99 | == | Plus |