Clone UFO04340 Report

Search the DGRC for UFO04340

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:43
Well:40
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG2065-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04340.5prime Sequence

1110 bp (991 high quality bases) assembled on 2009-02-18

> UFO04340.5prime
CAGTCGACATGCAGGGCGGTCAGTTCACCAAGCAGACCGATGAGACCGGC
AAGGTGTTCATTGTCACCGGTGCCAACACGGGCATTGGCAAGGAGACGGT
CCTGGAGATTGCCAAGCGAGGAGGCACTGTGTACATGGCATGCCGGGATA
TGAACCGGTGCGAGAAGGCGCGCCAGGATATTATCAGGGAGACAAATAAC
CAGAACATATTCTCTCGAGAACTGGACTTGAGTTCGCTGGAATCCATTCG
CAAATTCGCTGCTGGATTCAAGAAAGAGCAGGATAAGCTTCATGTCCTGA
TAAACAATGCAGGAGTTATGCACTGTCCCAGAACACTGACCAAGGATGGC
TTCGAAATGCAGTTGGGAGTCAACCATATGGGACACTTCCTGCTCACCCA
CTTGCTGCTGGACGTATTGAAGAAAACTGCACCCAGTCGCATCGTGAACG
TTTCCAGCCTGGTGCACACCCAAGGTTTCATTAAAACTGCCGACCTAAAC
AGTGAAAAGTCGTACAGCAGAATCGGTGCCTATAGTCAGAGCAAGCTGGC
CAACGTCCTGTTCACCCGGGAATTGGCCAAGCGCCTGGAGGGAACGGGGG
TCACAACCAACTCCCTACATCCCGGTGCCGTGGACACGGAGCTGTCGAGG
AATTGGAAGTTCCTGAAACACCCCTTTGCACAGCTACTGCTCAAGCCCCT
CCTGTGGGTACTCTTCAAAACCCCTCGCAATGGAGCGCAGACCACTCTCT
ACGCAGCCCTGGATCCTGCACTAAAGGATGTTTCCGGGCTCTACTTTAGC
GACTGCCAGCCAAGGAAGTGTCCGCAGCTGCCCAGGACGACAGACTGGAA
AGTTCCTCTGGGCGGAGAGCGAGAAGTGGACCGGCGTGAATTCAACAAAG
TGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGGCCAGGTAAGT
GGTCATAATCTATAATCATATCTTATCATATTCACAACTAGCTCAAGAGA
TCTTGGTCATGATGATGCTTGGAATCTCCACAATAAAAACGCCCGGCGGA
ACCGAAGTTCTGACAATCTAAAGGGAGTCTGAGGGCTATATGGACACTAC
AGGAGTCAGC

UFO04340.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2065-RB 1233 CG2065-RB 184..1085 7..905 4420 99.6 Plus
CG2065-RA 1204 CG2065-RA 155..1056 7..905 4420 99.6 Plus
CG2064-RA 1210 CG2064-RA 195..844 7..656 1270 79.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7664573..7664835 421..683 1315 100 Plus
2R 25286936 2R 7664038..7664296 7..265 1295 100 Plus
2R 25286936 2R 7664896..7665111 683..896 980 99.1 Plus
2R 25286936 2R 7664352..7664509 265..422 790 100 Plus
2R 25286936 2R 7666151..7666400 7..256 710 85.6 Plus
2R 25286936 2R 7655578..7655712 9..143 435 88.1 Plus
2R 25286936 2R 7662173..7662429 9..265 340 75.5 Plus
2R 25286936 2R 7666475..7666630 267..422 315 80.1 Plus
2R 25286936 2R 7666792..7666920 528..656 300 82.2 Plus
X 23542271 X 6342357..6342458 48..149 255 83.3 Plus
2R 25286936 2R 7657419..7657555 9..145 250 78.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:54:54 has no hits.

UFO04340.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:04 Download gff for UFO04340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 151..1061 1..911 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:40 Download gff for UFO04340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 151..1061 1..911 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:33 Download gff for UFO04340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2065-RA 151..1061 1..911 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:33 Download gff for UFO04340.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7664896..7665111 683..896 99 == Plus
2R 7664034..7664296 1..265 98 -> Plus
2R 7664353..7664509 266..422 100 -> Plus
2R 7664575..7664834 423..682 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:40 Download gff for UFO04340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3551539..3551801 1..265 98 -> Plus
arm_2R 3551858..3552014 266..422 100 -> Plus
arm_2R 3552080..3552339 423..682 100 -> Plus
arm_2R 3552401..3552616 683..896 99 == Plus