UFO04341.5prime Sequence
1119 bp (1033 high quality bases) assembled on 2009-02-18
> UFO04341.5prime
CAGTCGACATGAAGAGCTGTGCGGCGATTGGAGTCCTTCTGGTACTGCTA
CTTCAGTACGAAGTGGTTAGGACGGACAGCGATAGCAGCGACAGCAGCAG
CAGCAGCAGTGGAGAGAAGAAGCACAAGCACTCCAAGACGGAGCACAAGT
ACAATTATCCTGCATATCCTAATCCGGGCTATCCTCCGTATCAAGAAATG
GGAGGCTATCCTTCATATCTCTACAATCCGTACATGCCGTATCCTCCGTA
TCCTCAAATGGGAGGCTATCCTTCATATCCCTACAATCTGTACATGCCCC
CACCACCACCACCACCGCCACACCCGCAACAAGCTCCGCCACCATCAATG
TATCCACCCGACCCGTCCGGATATCCAGGCGGCTATCCACCGCAGGGGGC
TCCCGGACAGAATCCAGTTAACAACCCAAATGCGATCCCCAATCAGCCTC
AGGCACAGCAGCCTGCCAGCGGCCCGGGATCAGGGCCTGCCCCGAACTAT
CCTCCAGGCGGCTCGAGCGTTATTAATCATTCCCTTAAGGTCAACAAGGA
ATACAACGAGGACGGTCACCACCAATCTTCAACGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATGGCACGTTT
AATCAAAACTGGTGAACTCACCCAGGGATGCTGAAAGAAAACATATTCTC
AATAATCCTTAAGAATAGCAGTTCCGTACACGCCCCATCTTGCAATAATG
GTGAACCTGCGAATGCTCT
UFO04341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16743-RB | 1013 | CG16743-RB | 257..832 | 9..584 | 2880 | 100 | Plus |
| CG16743-RA | 742 | CG16743-RA | 55..630 | 9..584 | 2880 | 100 | Plus |
| CG16743-RB | 1013 | CG16743-RB | 428..486 | 240..298 | 220 | 91.5 | Plus |
| CG16743-RB | 1013 | CG16743-RB | 488..546 | 180..238 | 220 | 91.5 | Plus |
| CG16743-RA | 742 | CG16743-RA | 226..284 | 240..298 | 220 | 91.5 | Plus |
| CG16743-RA | 742 | CG16743-RA | 286..344 | 180..238 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10972652..10973227 | 9..584 | 2880 | 100 | Plus |
| 2L | 23513712 | 2L | 10972823..10972881 | 240..298 | 220 | 91.5 | Plus |
| 2L | 23513712 | 2L | 10972883..10972941 | 180..238 | 220 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:26:10 has no hits.
UFO04341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:03 Download gff for
UFO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 66..648 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:09 Download gff for
UFO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 48..630 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:26 Download gff for
UFO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16743-RA | 48..630 | 1..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:26 Download gff for
UFO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10972645..10973226 | 1..583 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:09 Download gff for
UFO04341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10972645..10973226 | 1..583 | 99 | -> | Plus |
