UFO04343.5prime Sequence
1127 bp (1024 high quality bases) assembled on 2009-02-18
> UFO04343.5prime
CAGTCGACATGGTTAACATAGTGGACAGCGGGTCGAAGCATGCGCCCCAG
GAAATGGAGCAATTCCTGCCCGGCGAAGGAAAAGTCATGTACAAAATCCA
ACCCCGAAAGTCGGATACCGAGCAGGCCTTGGCTGGAAATGACTTTGATC
CTTTCGCATTGCGGGACAATCCGCATCCAACAACCGATAATGAAACTCTC
ACGCATTTGCTTAAGGCCTCCTTGGGAACCGGTATCCTGGGCATGCCATT
TGCCTTCATGTGCTCCGGTCTCATCATGGGAATCTTCTCCACCATTTTCA
CCGCCTTTATATGCACGCACTGCAGTTACGTGTTGGTAAAATGCGGACAC
AAGTTGTACTACAGAACTCGCCGCACCAAGATGACCTTTGCCGAAATTGC
CGAGGCTGCCTTCCAAAAAGGACCAAAATGGTGCCGTGGCTTCGCGCCAG
TGGCCAAGTTCTCCATCCTGTTTGGTCTGTTCCTGACGTACTTTGGCACC
TGCTCGGTGTACACGGTTATTGTGGCCTCGAACTTTGAGCAGTTGATTTC
CTATTGGACGGGAACGGCAGTGTCGCTGCGCATGCTCATTTGCATAATGC
TGGTGCCGTTGATCCTCATCGCCTGGGTGCCAAATCTCAAGTACCTGGCA
CCCGTGTCGATGGTGGCCAATGTTTTCATGGGCCTGGGACTGGGCATTAC
GTTCTACTATCTGGTCCAGGATCTGCCACCAGTGGAGGAGCGCGAGTCCG
TTGTTTGGAGCACACTGCCGCAGTTCTTCTCGATCACCATCTTTGCAATG
GAGGCAATCGGTGTGGTTATGCCGCTGGAGAACAACATGAAGACGCCACA
GAGTTTCCTCGGAATCTGCGGTGTGCTCAGCCAGGGCATGTCGGGCGTGA
CCCTTATTTATATGCTGCTGGGATTCCTTGGATATCTGCGTTACGGTTCC
GCCACGGTGAGAGCATCACCCTGATCTGCCCATCGAGGAGTGGCCGCCAG
ACGGTGAGTGCTCATTCCCTGGCCGTTATGCACATTTGACTGCAGTTCTT
TGTGGTGCCTGGAGATCATCTGATGCATAAGGAATGCCAGAGCCCGACTT
GTCACTATGTGCTGCCCCAGTCTGGAC
UFO04343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| path-RD | 3122 | CG3424-RD | 584..1656 | 9..1072 | 5105 | 99 | Plus |
| path-RA | 2772 | CG3424-RA | 234..1306 | 9..1072 | 5105 | 99 | Plus |
| path-RE | 2532 | CG3424-RE | 74..1066 | 89..1072 | 4705 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9496086..9496832 | 1072..335 | 3250 | 98.1 | Minus |
| 3L | 28110227 | 3L | 9496895..9497048 | 338..185 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 9497116..9497211 | 184..89 | 480 | 100 | Minus |
| 3L | 28110227 | 3L | 9499020..9499087 | 90..23 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:25 has no hits.
UFO04343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:01 Download gff for
UFO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| path-RA | 227..1375 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:56 Download gff for
UFO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| path-RA | 226..1374 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:55 Download gff for
UFO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| path-RA | 226..1374 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:55 Download gff for
UFO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9496086..9496831 | 336..1072 | 98 | <- | Minus |
| 3L | 9496898..9497048 | 185..335 | 100 | <- | Minus |
| 3L | 9497116..9497211 | 89..184 | 100 | <- | Minus |
| 3L | 9499022..9499086 | 24..88 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:56 Download gff for
UFO04343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9489186..9489931 | 336..1072 | 98 | <- | Minus |
| arm_3L | 9489998..9490148 | 185..335 | 100 | <- | Minus |
| arm_3L | 9490216..9490311 | 89..184 | 100 | <- | Minus |
| arm_3L | 9492122..9492186 | 24..88 | 100 | <- | Minus |
