UFO04344.5prime Sequence
1117 bp (1014 high quality bases) assembled on 2009-02-18
> UFO04344.5prime
CAGTCGACATGGCTAGAACCCGAATTCAGATGCTGCTACTTGTTGTTGCG
CTGACGGCGGTGATAAGTGGAGCAAGTGCCTCCAGCATACCGGAAGAGCT
GCCCCACAATCCGCTCGAGCACGACCCCCTGCACCCCAGGCACTTCGACG
GGGGCGAGCACAATGCCCAGTTTGACCACGAAGCCTTCTTGGGCCCGGAC
GAGTCCAAGAAGTTCGACAGCCTGACACCCGAGGAGAGCAGGCGGAGATT
GGGCGTCATTGTGGACCGAATCGACGAGAACAAGGACGGGTCAGTCACAT
TGGCGGAGCTAAAGAACTGGATCGCCTACACCCAGAGGCGCTACATCGAA
GAAGACGTGGGTCGCGTGTGGAAGCAGCACAATCCGGACAACAATGAGAC
CATAAGCTGGGATTCCTACATGCAGACTGTCTACGGCTTCATGGATGATC
TGAGCCCCGACGAGAAGGAACAGGAGGAAAATGGAGTCAGCTACAAGAGC
CTGCTGAAACGCGATCGGTACCGCTGGTCGGTGGCCGACCAGGACTTGGA
TGACAATCTCACCAAGGATGAGTTTACCGCCTTCCTGCACCCCGAGGACC
ATCCCAGCATGAAGGGTGTGGTTCTGCGCGAGACCATTACCGATCTGGAC
AAGGACCACGATGGCAAGATCTCGGTGGACGAGTACATTGGCGACATGTA
CCGATCGACGGGCGCGGAAGACGAGGAGCCCGAGTGGGTGGCTAACGAAA
GGGAGGCGTTCTCCACACATCGCGACCTGCACAAAGATGGTTATTTGAAC
GAGGAGGAAGTGAAGCAGTGGATTGCGCCCCATGACTTCGATCATTCGGA
GGCGGAGCCAAGCACCTGCTGTTCGAGGCCGATGCGGACCACGATGATAA
GTTGACAAAGAGAAATACTAGACAAGTACGACGTTTTCGTCGGCTCCAGG
CCACGATTCGGCGAGGCTTGGCCGCCACGATGAGTCGCAAGCTTTCTAGA
ACATTCGTTTGGCGCCGCGCCCAGTAGTGTTCATAATCTATCATATCATA
TCTAATCACACTAGCTAGGAGATCTGTCATGAACTATGCCTTGATTCTAC
CAATTAAAAACGCTCGG
UFO04344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scf-RA | 1600 | CG9148-RA | 55..1039 | 9..985 | 4710 | 99.1 | Plus |
| scf-RB | 1386 | CG9148-RB | 1..825 | 169..985 | 3910 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1298726..1299201 | 9..484 | 2380 | 100 | Plus |
| 3L | 28110227 | 3L | 1299318..1299785 | 483..947 | 2195 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:51 has no hits.
UFO04344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:00 Download gff for
UFO04344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 101..1098 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:33 Download gff for
UFO04344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 47..1044 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:36 Download gff for
UFO04344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scf-RA | 47..1044 | 1..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:36 Download gff for
UFO04344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1298718..1299200 | 1..483 | 99 | -> | Plus |
| 3L | 1299319..1299833 | 484..991 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:33 Download gff for
UFO04344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1298718..1299200 | 1..483 | 99 | -> | Plus |
| arm_3L | 1299319..1299833 | 484..991 | 97 | | Plus |
