UFO04347.5prime Sequence
1124 bp (1030 high quality bases) assembled on 2009-02-18
> UFO04347.5prime
CAGTCGACATGTCTCAGCCCAAGCCGATTTTGTATTACGACGAGCGCAGT
CCGCCGGTCCGCAGTTGCCTTATGCTAATCAAATTGCTCGATATAGATGT
GGAGCTCAGGTTTGTGAATCTCTTCAAGGGCGAGCAATTCCAAAAAGATT
TCTTAGCGTTAAATCCCCAGCACAGTGTTCCCACCCTAGTCCACGGTGAT
CTGGTGCTGACGGACAGTCATGCTATACTCATTCACCTGGCGGAGAAGTT
CGATGAGGGCGGTAGTTTGTGGCCGCAGGAGCACGCAGAACGGATGAAGG
TTCTGAACCTCCTGCTCTTCGAGTGCTCCTTTTTGTTCCGACGTGACAGT
GATTTTATGTCGGCGACTGTCCGCCAGGGATTCGCCAATGTCGATGTGGC
ACATCATGAACGCAAGCTGACCGAGGCGTATATTATCATGGAGCGTTACC
TGGAAAATAGCGATTTTATGGCCGGGCCACAGCTGACGCTCGCCGACTTA
TCCATCGTGACCACATTGAGCACCGTCAATCTCATGTTTCCCCTGTCGCA
GTTCCCACGTCTGCGGCGCTGGTTCACCGCGATGCAGCAGCTGGATGCCT
ACGAGGCCAACTGCAGTGGCTTGGAGAAGCTCCGCCAAACGATGGAGAGC
GTCGGTAGCTTTCAGTTCCCATCGTCATCAGCGGTAGTCACCGAGAAGGT
GGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCACTCATCGCAGTACTGTGTATTCATTAAGCATTCTGCGACATGAAG
CCATCACAAACGGCATGATGAACCTGATCGCAGCGGCATCAGCACTTGTC
GCCTGGCTTTATATTGCCATGGGGAACGGGGGCGAGAAGTGTCCTATTTG
GCACGCTTAATTCAAACTGTGTGA
UFO04347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE14-RA | 1008 | CG4688-RA | 60..755 | 9..704 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13240536..13240760 | 480..704 | 1125 | 100 | Plus |
| 2R | 25286936 | 2R | 13240064..13240265 | 158..359 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 13239788..13239941 | 9..162 | 755 | 99.4 | Plus |
| 2R | 25286936 | 2R | 13240323..13240446 | 359..482 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:10 has no hits.
UFO04347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:07 Download gff for
UFO04347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4688-RA | 61..760 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:42 Download gff for
UFO04347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE14-RA | 60..759 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:55 Download gff for
UFO04347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE14-RA | 60..759 | 9..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:55 Download gff for
UFO04347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13240539..13240764 | 483..710 | 98 | == | Plus |
| 2R | 13239788..13239937 | 9..158 | 100 | -> | Plus |
| 2R | 13240065..13240265 | 159..359 | 100 | -> | Plus |
| 2R | 13240324..13240446 | 360..482 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:42 Download gff for
UFO04347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9128044..9128269 | 483..710 | 98 | == | Plus |
| arm_2R | 9127293..9127442 | 9..158 | 100 | -> | Plus |
| arm_2R | 9127570..9127770 | 159..359 | 100 | -> | Plus |
| arm_2R | 9127829..9127951 | 360..482 | 100 | -> | Plus |
