UFO04349.5prime Sequence
1122 bp (1014 high quality bases) assembled on 2009-02-18
> UFO04349.5prime
CAGTCGACATGAGCCTTCGCCAGCCCAATGCCAACCAGCCGCTGCTTCTT
CGCGTGCGCCGAGCCCTTGGTCGCGATGCACCCTTTCAGATGCGCTACCT
AGGAAACCCCGAGGTGGATCTGCGCCGGCCTACATTGGTACGCAGCTGCA
TGGACTGCGCCTGCACCAATGGCATTTTGGAATTCCTCACGGAAATGGGC
TTCCGCCTGGAGTTCGAGTACATAGCAAAGGGCTATATGTTCCGCAAGGG
GCGCATGAAGATTACCGTCTCCAAGCTCATTAAGATTGTGCCCGGCAAGC
AGCAGGACATGGCCAACGAGCCAATCTCACAAAGCTACATAGTGGAACTC
TCTGTGGTGGCGCCAACGGGGCAGGAGAATGTCGGCGAGGAAATGCGCGT
GTTTGCCGAGCAACTAAAGCCACTCGTGCAGCTCGAGAAGATCGACTACA
AGCGACTGGGCGGCATGCCGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATCTCATAAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACGTACACGCCAAATCTGCGAAT
ATATGTGTAGAAACTGCGAATCGTCTGGTATTCACTCCAGAGCGATGAAA
CGTTCAGTTGCTCAATGAAACGGGTACAAGGGTGAACCTATCCCAATCCA
CCAGCTTCACGGCTCATGCATA
UFO04349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED18-RC | 865 | CG14802-RC | 318..779 | 9..470 | 2310 | 100 | Plus |
| MED18-RA | 842 | CG14802-RA | 295..756 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1866562..1866801 | 231..470 | 1200 | 100 | Plus |
| X | 23542271 | X | 1866273..1866496 | 9..232 | 1120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:03 has no hits.
UFO04349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:57 Download gff for
UFO04349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RC | 314..785 | 3..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:05 Download gff for
UFO04349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RA | 291..762 | 3..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:47 Download gff for
UFO04349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RA | 291..762 | 3..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:47 Download gff for
UFO04349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1866269..1866495 | 3..231 | 98 | -> | Plus |
| X | 1866563..1866801 | 232..470 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:05 Download gff for
UFO04349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1760302..1760528 | 3..231 | 98 | -> | Plus |
| arm_X | 1760596..1760834 | 232..470 | 100 | == | Plus |
