UFO04350.5prime Sequence
1075 bp (994 high quality bases) assembled on 2009-02-18
> UFO04350.5prime
CAGTCGACATGCCCATAGATACGCGCGAGTTGATGGAGGCGATAGCCATC
GTAGCGGACGAGCGCAACGTCCGCGTCGCCGTCAAGCAGTCCGGCAAGGG
AGCGGCAATCTGCGCCGCCTGCTCCTTTGCGGGTGGCATGCTCCTGGGCC
CCGTTGGGCTGGCGGTTGGCGGGGCCGCCGGCGGAATCGCCGCCTACAAG
ATGACAAGCGGCACATTCCGTCCGCTGGGCGAAGTCATCCTAAACGACCT
GACGGACGCACAGCGAGAGCAGCTGGTGCAGCACGTAACCATGGCCGTGG
CCGACATACATCCCACCGACGTGGTGATGCTGCTGCCGCTGATTGTCCAG
AACGCCTCCATTCAGCAGGCTGTGCTTAACACTGTCATGTCATTCGTGAC
CAACGAGTTGCGCATGCAGATTGTGGACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATTATTT
GCCCATGGTGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTAAT
CAAAACTGGTGAAACTCACCCAGGGATGGCTGAAACGAAAACATATTCTC
ATAAACCCTTTAGGAAATAGGCCAGGTTTCACGTAACACGCCACATCTTG
CGATATATGTGTAAGAACTGCCCGAAATCGTCGTGCTATTCACTCCGAGC
GATGAAACGTTTCAATTTGGCTCATGAAGACGGGTAACAGGGTTGAACCA
TTATCCATATTCACCCAGCCTACCG
UFO04350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3740-RA | 829 | CG3740-RA | 289..708 | 9..428 | 2100 | 100 | Plus |
| Mur2B-RC | 6772 | CG14796-RC | 44..262 | 210..428 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1668527..1668745 | 428..210 | 1095 | 100 | Minus |
| X | 23542271 | X | 1668807..1669009 | 211..9 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:19:42 has no hits.
UFO04350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:56 Download gff for
UFO04350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 271..696 | 9..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:29 Download gff for
UFO04350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 289..714 | 9..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:30 Download gff for
UFO04350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3740-RA | 289..714 | 9..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:30 Download gff for
UFO04350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1668527..1668744 | 211..428 | 100 | <- | Minus |
| X | 1668808..1669009 | 9..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:29 Download gff for
UFO04350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1562560..1562777 | 211..428 | 100 | <- | Minus |
| arm_X | 1562841..1563042 | 9..210 | 100 | | Minus |
