UFO04351.5prime Sequence
1122 bp (1015 high quality bases) assembled on 2009-02-18
> UFO04351.5prime
CAGTCGACATGCTGTTCCACAAGGGCGGTCCCATGGTGGGACAATCCAGG
GGCTACGCCTTCGTCACCTTTGCGCAGAACGAGGGAGCCACCAATGCGCT
ACTGAAACTGGACGGAACCAGCGTGGGAAATCGCTCGATAGCCGTGCGTT
TGGCCAAGAACATTAAATATGATGAAACGCAGAAGCCAAAGCCGCGCCTG
GATATACCGGCCTTGGGCACAGGTAAACGCGAGGAGAAGGTCAGCAAAAC
GGAGGCCATTCGGGCCATTGAGGCCAAGCTGAAAATGTTGGAGCGCCAGA
CAGACGACAATCTCGAGCTGAATACAGCGGGCAGGGGCGAGGCCAACGTG
CCCTTCATCCAGCGCTATCAGTTTAACAAGGATCGCGACGGTTCGCAGCG
CTACGGAAAGTCATCGGCTCCATATCATCACCAGCAGCGTCCCAAGCGCC
ACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGA
AGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAG
GGATTGGCTGAGACGAAAAACATATCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTGCGATTTATTGTGTAGAACT
GCCGGAAATCGTCGTGTATTCCCTCGAGCGATGAAACGTTTCAGTTTCTG
ATGGAAACGGTGTACCAGTTGACACTATCCCTATCACCAGCTCACGTCTT
CATTGCCATACGAATTCGGGGA
UFO04351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14414-RE | 849 | CG14414-RE | 257..705 | 4..452 | 2245 | 100 | Plus |
| CG14414-RD | 825 | CG14414-RD | 233..681 | 4..452 | 2245 | 100 | Plus |
| CG14414-RA | 779 | CG14414-RA | 187..635 | 4..452 | 2245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14581745..14582030 | 167..452 | 1415 | 99.7 | Plus |
| X | 23542271 | X | 14581579..14581675 | 75..171 | 485 | 100 | Plus |
| X | 23542271 | X | 14580966..14581039 | 4..77 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:02 has no hits.
UFO04351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:55 Download gff for
UFO04351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RC | 237..695 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:59 Download gff for
UFO04351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RA | 183..641 | 1..459 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:23 Download gff for
UFO04351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14414-RA | 183..641 | 1..459 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:23 Download gff for
UFO04351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14580962..14581039 | 1..77 | 97 | -> | Plus |
| X | 14581582..14581674 | 78..170 | 100 | -> | Plus |
| X | 14581749..14582030 | 171..452 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:59 Download gff for
UFO04351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14474995..14475072 | 1..77 | 97 | -> | Plus |
| arm_X | 14475615..14475707 | 78..170 | 100 | -> | Plus |
| arm_X | 14475782..14476063 | 171..452 | 100 | == | Plus |
