UFO04354.5prime Sequence
1184 bp (1057 high quality bases) assembled on 2009-02-18
> UFO04354.5prime
CAGTCGACATGGATCTTCTCAAGAGGCACCTGCTGCTCCTGGTCATCGGA
GCTTGCCTGTGTGTCTGCGCCCAGGCCACGATCACCATCCAGAAAACCAA
GCCAGCGCTGCCGGATCCCAGCCAGTTGCTAGCCAAGCTACCGCCAAAGC
CGGACTTTCTCAAGGATCCCTCTAAATTACTAGCCAAAATCGCGCAATCC
AAACCAGCTCTCCCAGATCCCAGCCAGCTGCTCGCCAAACTGCCGCCCAA
GCCCGCTATCCTCAAGGATCCCAGCCAGCTGCTCTCCAAGTTCGTGAAAC
CAAAGCCAGTGATCATAAAGCCGGTGATTGTGAAGCCGGTGGTGGTGGTC
AAGCCCGTGGCGGTTGGCGGAGGTGGCGGTGGTCACGGCCACGGACATCA
TGGACATCATGGACACCATGGCAAGGGCAAGCTAGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCATAAACCCTTTAGGGAAATAGGCAAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTGTAGAAACTGCGGAAATCGTCGTGT
ATTCACTCCAGAGCGATGAAAAACGTTTCAGTTTGCTCATGGAAACGGTG
TAACAGGGTGAAACTATTCCATATCACCAGCTCACCGTCTTTTCATGCAT
ACGAATTCCGGAATGAACATTCATCAGGCCGCCAGAAAGTGAATAGCGAT
AACCTTGGCCTAATTTTTCTTTACGGCCTTAAAA
UFO04354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11413-RA | 602 | CG11413-RA | 9..435 | 8..434 | 2135 | 100 | Plus |
| CG4622-RC | 2762 | CG4622-RC | 372..798 | 434..8 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24536198..24536624 | 8..434 | 2135 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:02 has no hits.
UFO04354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:54 Download gff for
UFO04354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RB | 298..741 | 1..448 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:39 Download gff for
UFO04354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11413-RA | 2..445 | 1..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:51 Download gff for
UFO04354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RC | 362..805 | 1..448 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:51 Download gff for
UFO04354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24536191..24536624 | 1..434 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:39 Download gff for
UFO04354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20423714..20424147 | 1..434 | 99 | == | Plus |
