UFO04355.5prime Sequence
1146 bp (1031 high quality bases) assembled on 2009-02-18
> UFO04355.5prime
CAGTCGACATGCTGGACGCGGAGGTGCGAGAACTTATGCAACCCTTTGTG
TTGAGTGATTACCAGGTGCAGGAAGTGTACAGTCGCTTTTGCCTGGAAGT
GGCCCGTGGACTTAAGCGGTCCACGCATCCACAGGCCAACGTCAAGTGTT
TTCCCACGTACGTGCAGGATCTGCCCACGGGCGACGAGATGGGCAAGTAC
CTGGCCCTGGATCTCGGCGGTACCAACTTCCGAGTACTGCTCGTCTCGCT
GAAAGGTCACCACGACGCCACGGTGGATTCTCAGATCTATGCCGTGCCAA
AGGACCTGATGGTGGGGCCCGGTGTGGACCTATTCGATCACATTGCGGGC
TGCCTGGCCAAATTTGTGGAGAAACACGACATGAAGACCGCATATCTGCC
ACTGGGCTTCACTTTTTCCTTCCCTTGCGTGCAACTAGGCCTTAAGGAGG
GCATCCTGGTACGCTGGACTAAGGGATTCGATTGTGCTGGGGTTGAGGGC
GAGGATGTGGGCCGCATGCTGCACGAGGCCATTCAGCGGCGCGGAGATGC
CGACATTGCCGTGGTGGCTATACTCAACGATACCACTGGCACCTTGATGT
CCTGCGCCCATCGTAATGCAGATTGCCGGGTGGGTGTCATTGTGGGAACT
GGCTGCAATGCCTGCTACGTTGAAGATGTTGAGAATGTGGACCTATTGCG
CGCAGACTTTAAAAAAACGAAGCGGAGTGTGATTGTAAATGCTGAGTGGG
GCGCCTTTGGTGAGGGTGGTCAGTTGGACTTTGTGCGCACCGAATACGAT
CGCGAAGTTGACGAAAAGTCTCTAAACCGATCGGAGCAGCTGTTCGAAAA
GATGACGGCGGGCATGTACTTGGGCACCTGTGCGCCTTGTGCTACTTCGT
GCCCTCGAGCGCAAGCTGATCTTTAAACAGAGCAGTCGACGTCCAGATTC
GCCAGCGTGCTGCAAAGAACGAAGAGGTTTCGAGAACGCGCTACATTTCG
AAATCGAAGACGACTCCTTCCAAAAGTTTGCCAGCCAGGAAAATTGTGAA
ATTCTGTTTGGGCTAAGAAGGCCCCGTGGAGGACCTGCGAACTCTGGAAA
ACAATCTGCGAGTGCGATACTAGCGACGCTTCTATTTATAGCCATC
UFO04355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-C-RA | 1493 | CG8094-RA | 66..1182 | 9..1116 | 5060 | 97.7 | Plus |
| Hex-A-RC | 4139 | CG3001-RC | 929..1045 | 126..242 | 210 | 78.6 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 714..830 | 126..242 | 210 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15219233..15220264 | 1035..9 | 4780 | 98.4 | Minus |
| X | 23542271 | X | 9586603..9586719 | 126..242 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:53 has no hits.
UFO04355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:53 Download gff for
UFO04355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 141..1180 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:01 Download gff for
UFO04355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 58..1097 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:19 Download gff for
UFO04355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-C-RA | 58..1097 | 1..1035 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:19 Download gff for
UFO04355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15219233..15220270 | 1..1035 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:01 Download gff for
UFO04355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11106738..11107775 | 1..1035 | 98 | | Minus |
