UFO04358.5prime Sequence
1151 bp (1023 high quality bases) assembled on 2009-02-18
> UFO04358.5prime
CAGTCGACATGGCCGCCGCTATCAAGAAGATCATCCCCATGCTGGACCGC
ATCCTAATCCAGCGTGCCGAGGCGCTGACCAAGACGAAAGGAGGCATTGT
TTTGCCGGAGAAAGCGGTGGGCAAAGTACTTGAGGGCACCGTTCTGGCCG
TAGGCCCTGGCACCCGTAATGCCTCCACTGGCAACCACATTCCCATTGGC
GTGAAGGAGGGCGATCGTGTTCTGCTGCCCGAATTCGGTGGCACCAAGGT
GAACCTAGAGGGTGACCAGAAGGAGCTGTTCCTCTTCCGCGAGTCCGACA
TCCTGGCCAAATTGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAACAAGGTGAACACT
ATCCCATATCACCAGCTCAACGTCTTTCATGCATACGAAATTCCGATGAG
CATTCATCAGCGGGCAGAATGTGATAAGCGATAAACTTGTGCTTATTTTT
CTTACGTCTTTAAAAGCCGTATATCAGCTGACCGGCTGTTATAGTATGGA
CAACTGACTGAAATGCCTCAAAATGTCTCTTTACGAATGCCAATATGGGG
A
UFO04358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11267-RA | 594 | CG11267-RA | 113..421 | 9..317 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13016356..13016518 | 11..173 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 13016587..13016730 | 174..317 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:00 has no hits.
UFO04358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:59 Download gff for
UFO04358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11267-RA | 106..414 | 9..317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:52 Download gff for
UFO04358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11267-RA | 113..421 | 9..317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:12 Download gff for
UFO04358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11267-RA | 113..421 | 9..317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:12 Download gff for
UFO04358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13016348..13016518 | 1..173 | 97 | -> | Plus |
| 3L | 13016587..13016730 | 174..317 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:52 Download gff for
UFO04358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13009687..13009830 | 174..317 | 100 | == | Plus |
| arm_3L | 13009448..13009618 | 1..173 | 97 | -> | Plus |
