UFO04359.5prime Sequence
1143 bp (1011 high quality bases) assembled on 2009-02-18
> UFO04359.5prime
CAGTCGACATGATGAAATTCGTGCAGATATTATTGTGCTACGGCCTACTC
CTCACCCTGTTCTTTGCCCTCAGCGAGGCCCGACCTTCGGGTGCCGAAAC
AGGACCGGACTCCGATGGACTTGATGGCCAGGACGCGGAGGACGTGCGAG
GCGCCTATGGAGGTGGCTACGATATGCCAGCCCAGGCAATCTATCCCAAT
ATTCCAATGGATCGGCTGCAGATGCTCTTTGCCCAATACAGACCCACCAG
TTACAGCGCCTATTTGAGGAGTCCCACCTACGGCAATGTGAATGAACTTT
ATCGGCTGCCCGAGAGCAAACGTCAAGTTAGATACCGGCAGTGCTACTTT
AATCCCATCTCCTGCTTTAGGAAGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACT
CCAGAGCGATGAAAACGTTTCAGTTTGCCTCATGGAAAACGGTGTAAAAG
GGTGAACACTATCCAAATATCACCAGCTCACCGTCTTTTCATTGCCCATA
CGAAAATTCCCGGATGAGCATCATCAAGCGGGCAGAATGGTGAATAAAGG
CCGATAAAACCTTGTGGCTTATTTTTTTCTTTACCGGTCCTTT
UFO04359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstC-RA | 1202 | CG14919-RA | 264..629 | 9..374 | 1830 | 100 | Plus |
| AstC-RB | 1199 | CG14919-RB | 264..626 | 9..374 | 1775 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11076927..11077067 | 247..107 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 11076738..11076864 | 374..248 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 11077122..11077221 | 108..9 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 943..1001 | 112 | 67.8 | Plus |
UFO04359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:58 Download gff for
UFO04359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-C-RA | 262..633 | 9..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:43 Download gff for
UFO04359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ast-C-RA | 264..635 | 9..382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:53 Download gff for
UFO04359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstC-RA | 264..635 | 9..382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:53 Download gff for
UFO04359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11076738..11076864 | 248..374 | 100 | <- | Minus |
| 2L | 11076927..11077066 | 108..247 | 100 | <- | Minus |
| 2L | 11077123..11077221 | 9..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:43 Download gff for
UFO04359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11076738..11076864 | 248..374 | 100 | <- | Minus |
| arm_2L | 11076927..11077066 | 108..247 | 100 | <- | Minus |
| arm_2L | 11077123..11077221 | 9..107 | 100 | | Minus |
