UFO04360.5prime Sequence
1076 bp (1004 high quality bases) assembled on 2009-02-18
> UFO04360.5prime
CAGTCGACATGCACCAGGTACTCAGCTACGAGACGGCGGTGCGGGCCAAC
AGCTCTCGGGAGTTCCGCGAGTACGTTTCCAAGCGCACCTGTGCCTCCCT
GGTGCTAACGATTGGCTTCTTCATGCTGATAACAGGATACTTGCTCGGTA
ATTTTGTGGCCGAGCGCAAGTACCACATTCGCCAGATGACGAAAGACGGC
GGCAGGTCCGTGAAACTGAGCAGCGCCGAGTATGCCAGCCTGCAGGAGCT
GCAATCATATCAGAAGGCCAAGGATCAGCTGTTGCTGGCCGCCCAGGAGC
TGGACAAGCTGCAGCAGCAGGACGAGAGCGAGCGGTATCTGGCCACGTCG
CTGAACACGGAGATCTTCAACAGGTACATATCCTGCACGCAGGATATACC
GCCCAACACGAACATTGCGGCCAGTCAGTTCACGGAACAGCTGATCGACA
ACACGGTGGCCAGGCAGCGCCACTGCTTGATGATCATCCAGCGGGTCATC
GACAACCACCTGGCCAACAGCCAGCTCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGTGAAAACGGGGCGAGAGTGTCCATATTGCCACGTTTAAATCAAAC
TGTGAACTCCACCCAGGATTGCTGAAACGAAAAACATATTCTCAATAAAC
CCTTTAGAATAGCCAGTTTTCCCGTACACGCCCACATTCTTTGGCGAATA
TTTGTTGTAAGAAACTGGCCGGAATC
UFO04360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15522-RB | 1381 | CG15522-RB | 669..1187 | 9..527 | 2595 | 100 | Plus |
| CG15522-RA | 1101 | CG15522-RA | 389..907 | 9..527 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928178..29928572 | 133..527 | 1975 | 100 | Plus |
| 3R | 32079331 | 3R | 29927995..29928122 | 9..136 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:06 has no hits.
UFO04360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:58 Download gff for
UFO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 385..910 | 1..527 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:07 Download gff for
UFO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 382..907 | 1..527 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:50 Download gff for
UFO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15522-RA | 382..907 | 1..527 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:50 Download gff for
UFO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29928181..29928572 | 136..527 | 100 | == | Plus |
| 3R | 29927988..29928121 | 1..135 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:07 Download gff for
UFO04360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25753710..25753843 | 1..135 | 97 | -> | Plus |
| arm_3R | 25753903..25754294 | 136..527 | 100 | == | Plus |
