UFO04361.5prime Sequence
1037 bp (953 high quality bases) assembled on 2009-02-18
> UFO04361.5prime
CAGTCGACATGTCTGAAGAAATCCTTTTCGATTGCCTCCATGCAGAGATA
GTCAATTATTGTCTGGATAGCAATAAGGAGCACGACCTGGCCACTTTGGA
GTATATAGGCTTCACCACCGGCTACCGCCTGATTGAGCGGCTCACCCGTG
AAGTTTCGCGTTTTAAGGACGAGTTGGAGACTATGAAGTTTATATGCACC
GACTTCTGGATGCTTATATACAAGAAGCAAGTGGACAACCTGAGGACGAA
CAACCACGGAATGTACGTTGTGCAGGACAAGGCTTTCCGCTTTCTGACTC
GCATCTCGCCGGGCACCAAGCAGCTGGAGCACGCGCCCAAGTTCGTGGCC
TTCACGTGCGGGCTGGTGCGAGGAGCTCTCAGCAATCTAGGCATTAACAG
CACCGTGACGGCCGAAGTGCAAAGCATACCCGCCTGCAAGTTTCACATAG
AAGTGAACAGGAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
CGGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAAACTGTGAA
CTCACCCAGGGATTGCCTGAGACGAAAACATATTCTCATAAACCTTTAGA
ATAGCCAGTTCACGTACACGCCCATCTTGCATTATGTGCGACTGCGAAAT
CGTCTGATTCTCGACAATGTACATTGTCTCTGGAACG
UFO04361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trs33-RA | 583 | CG6196-RA | 76..531 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15350397..15350785 | 464..76 | 1945 | 100 | Minus |
| 3R | 32079331 | 3R | 15350851..15350920 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:16 has no hits.
UFO04361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:49 Download gff for
UFO04361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6196-RA | 92..560 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:24 Download gff for
UFO04361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6196-RA | 68..536 | 1..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:41 Download gff for
UFO04361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trs33-RA | 68..536 | 1..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:41 Download gff for
UFO04361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15350397..15350783 | 78..464 | 100 | <- | Minus |
| 3R | 15350852..15350927 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:24 Download gff for
UFO04361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11176119..11176505 | 78..464 | 100 | <- | Minus |
| arm_3R | 11176574..11176649 | 1..77 | 94 | | Minus |
