UFO04362.5prime Sequence
781 bp (767 high quality bases) assembled on 2009-02-18
> UFO04362.5prime
CAGTCGACATGTGTGCAAAGAGCCGAGTGGCTTCTCCTGGGGCCGGTGGC
ACCAGCCTGTGTTCCGAAGGCCGCATCAGTTTATATTGCTTTCTGATTAC
TGCAGCTCTAGTCCTGATTCCCTCGGTGCCCCAGAATCTTTATGGAGTGG
TGCCACAGGTGTGGGGCGCCGTCCTCTGGGGTCCATTTTTGTACTACGCC
CTTATTAACATGATCATACGGTTTGTGCTGCGGAACCACGACTACCAGGT
GGCCATTAGGGCATCCTTCCTGGGCTTTGCCATGGCCGTGAGTGTGCTGG
TCATCTGCTTTGCTCCCACCGAGTGGCAGCAATTTGGCGCCTACGGATGC
TTCATGTCCCTTTTCCACTACTCGGAGTTCCTCGTTATCGCCTTTGCCAA
TCCGCGCACTCTCAGTCTCGACTCCTTTATGCTGAACCACTCTGTGCACT
ATGGACTGGCGGCGGCAGCCAGTTGGATCGAGTTCTCACTAGAGGTGTAC
TACCTGCCGCAGTTCAAGAGATACGGATACATTTGGGTGGCGGGCGTGGT
CCTGTGCCTGCTGGGCGAGATGGTTCGCAAGGCAGCCATCATCACAGCTG
GCCGGAGCTTCACTCACTTGGTCCAGAATGAGAAACACTCGGAACACAAG
CTAATAACAAGCGGGATCTACGCCTACTGCCGCCACCCGTCTTATGTCGG
CTGGTTCTGGTGTCCATCTGAACCCAAATCGTGCTATTGAATCCCATCTG
CTATGCATTTACACACTGGTCAGCTGGTTGT
UFO04362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste14-RB | 1121 | CG11268-RB | 116..890 | 9..781 | 3780 | 99.4 | Plus |
| ste14-RA | 1227 | CG11268-RA | 116..890 | 9..781 | 3780 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13018685..13019061 | 246..622 | 1885 | 100 | Plus |
| 3L | 28110227 | 3L | 13018381..13018623 | 9..251 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 13019187..13019350 | 620..781 | 675 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:53 has no hits.
UFO04362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:48 Download gff for
UFO04362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11268-RA | 126..905 | 1..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:29 Download gff for
UFO04362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste14-RA | 111..890 | 1..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:39 Download gff for
UFO04362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste14-RA | 111..890 | 1..781 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:39 Download gff for
UFO04362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13018376..13018620 | 1..248 | 98 | -> | Plus |
| 3L | 13018688..13019059 | 249..620 | 100 | -> | Plus |
| 3L | 13019188..13019350 | 621..781 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:29 Download gff for
UFO04362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13011476..13011720 | 1..248 | 98 | -> | Plus |
| arm_3L | 13011788..13012159 | 249..620 | 100 | -> | Plus |
| arm_3L | 13012288..13012450 | 621..781 | 96 | | Plus |
