UFO04363.5prime Sequence
1129 bp (1009 high quality bases) assembled on 2009-02-18
> UFO04363.5prime
CAGTCGACATGTTCGTCTTACTCGGAGCACTCTGTCTGCTGCAGACGGCT
AGCTTGGTGCCGGCACAGCTGTTTACTTTCCGCGATGGCAAGGTGGGCGT
GAACTTCGCAGGATATCACGCAGATGCGGGACTCGGCGGACTCCTTACGG
GCAACTCTGCCCACGGCGGACTCAGCGCCTCGGCCGGAACACCTTGGGGC
TCCCGGGCAGCCGCCGGTCTGGGCGGCAATCTGGATGGACGCACAGCCGG
CGTGGGATACGCCGCCGCCCAGGCCAATCCCTCGGTGGGAGCCAGTGCGC
TTCTGGGCGGCAGCGCCGGTGAACATGGTTATATCGGAGCCGAGGCGCAC
AGTCCTGGTCGCACTGTGATCTCCTCCTCGCAGCACTCAGTCCAGCCGGC
ATATCCTGCTGATCCTGTGCCCGTCTCACCCACCACCGGCCCCGTCGTCA
CCAGCCACATCCAAAAGGTCAAGCCGCCCAAGAAGTACTCGCTGATCAAC
CAAGATGCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTACAAGTC
CGTCCAGCGACCCCAGGCCGTGAACAATCGCTTCCTGGCGCCCCAGGCCC
AAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATAAGCATTCTGCCGACATGGA
AGCCATCACAAACCGCATGATGAACCTGATCCGCCGCGGCATCCACACCT
TGTCGCCCTGCGTAATAAATTGCCCATGGGAAAACGGGGGCGAAGAAATT
GTCTCCTATTGGCCACGTTTAATCAATCTGTGGGAACTCACCCAGTTGGC
TGAAAGAAAAAAAAATCCTCAATAGCCTTAGGGAAAAGGCCGGGTTCCCG
AACCCGCCACATCTGCAATATGTGTGAAA
UFO04363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9812-RE | 1223 | CG9812-RE | 131..724 | 9..602 | 2970 | 100 | Plus |
| CG9812-RB | 1313 | CG9812-RB | 221..814 | 9..602 | 2970 | 100 | Plus |
| CG9812-RD | 1574 | CG9812-RD | 221..718 | 9..506 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23414492..23414766 | 511..237 | 1360 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23414831..23415003 | 238..66 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 23413038..23413133 | 602..507 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 23419227..23419286 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:57 has no hits.
UFO04363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:47 Download gff for
UFO04363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:38 Download gff for
UFO04363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 1..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:42 Download gff for
UFO04363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9812-RB | 217..814 | 1..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:42 Download gff for
UFO04363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23413038..23413133 | 507..602 | 100 | <- | Minus |
| 2R | 23414497..23414765 | 238..506 | 100 | <- | Minus |
| 2R | 23414832..23415000 | 69..237 | 100 | <- | Minus |
| 2R | 23419227..23419290 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:38 Download gff for
UFO04363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19300561..19300656 | 507..602 | 100 | <- | Minus |
| arm_2R | 19302020..19302288 | 238..506 | 100 | <- | Minus |
| arm_2R | 19302355..19302523 | 69..237 | 100 | <- | Minus |
| arm_2R | 19306750..19306813 | 1..68 | 94 | | Minus |
