UFO04364.5prime Sequence
951 bp (950 high quality bases) assembled on 2009-02-18
> UFO04364.5prime
CAGTCGACATGGCATTTAACATGTGTGCAAATTCGCTTTGCTTGGGCCTA
GTTGCCCTTCTGGTTTTGGCCAAAAGTAGCGACGCCTTGCAGGCAAAACG
TTTCTTCGGTGTGGGCGAAAGGGTGGAAGGGGACCAGCTCCTGGTCAAGG
ATGTGCTCCATTCCCGTCCAGCCGGCGCCGGCGAGCTGCCCGGAGTGACG
TTCACCTACGAGATTTTGGAGCCAATCACTTGCGTGGAAATTCTATCGGA
GGAAAACATTTCGGCGGAGGTGAAATTCAGCTTGGTGAATCGCCTCATCG
TGGGCATAATCCAATTGGCTGCCAGCAATCAAAGCGTTAACCCATCAGCT
CCCATTGTTCCACCAACCGTCGAGTTCGATGTGACCATCATGGTGTTTGG
CCTAAATGAGACCTCCAAGCATTTCGATCCCTCACTGGTCATCAATCGTG
ATCAGCAATTTGAGGGCGAGATGGAGCCCTACGAGGAAATCTTCCCGGAA
CCGGATCAATATGTTGAGGTATTTGACAACAATAGACGCGATGACCTGGA
GATCGACGAAGGTGATGACAATCTGTCCGAGGAGGACATCGAGAGCTATA
CGGAAGGTCCATTCGTAACAGACTATTTCGATAAGCCAGACAAATACATT
GAAGTTGGAAAAAGGCAGGCGGGCGATGAACTTCTCTATGATTGCTATCA
GACATCGCCGGATGATTCGGAAAAGCCAACCAATCACTCGGTGGTTTTCT
ACTACATCGACAATAATCTAATAACATACGTGCGGTTTGCTATACTCGAT
CACTATGCCATAGAAATATCTCGGAGGCCGAATACCAGCGCCGGTGGCAG
AGTACAGTCACTATACGAGTGGCACCCTAAGGCGGTCATCACCGACTACG
ATTCAAAAGCCTTTTTGTCAGATGTACTTCTTACGGATTATGGGGGCGCA
A
UFO04364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5612-RA | 1507 | CG5612-RA | 98..1043 | 9..950 | 4525 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27624230..27624648 | 673..255 | 2095 | 100 | Minus |
| 3R | 32079331 | 3R | 27625669..27625914 | 254..9 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 27624046..27624174 | 800..672 | 645 | 100 | Minus |
| 3R | 32079331 | 3R | 27623854..27623966 | 919..810 | 415 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:21 has no hits.
UFO04364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:46 Download gff for
UFO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 87..1040 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:53 Download gff for
UFO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 89..1042 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:53 Download gff for
UFO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5612-RA | 89..1042 | 1..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:53 Download gff for
UFO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27625669..27625922 | 1..254 | 98 | | Minus |
| 3R | 27623824..27623976 | 801..949 | 94 | <- | Minus |
| 3R | 27624046..27624173 | 673..800 | 100 | <- | Minus |
| 3R | 27624231..27624648 | 255..672 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:53 Download gff for
UFO04364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23449546..23449698 | 801..949 | 94 | <- | Minus |
| arm_3R | 23449768..23449895 | 673..800 | 100 | <- | Minus |
| arm_3R | 23449953..23450370 | 255..672 | 100 | <- | Minus |
| arm_3R | 23451391..23451644 | 1..254 | 98 | | Minus |
