UFO04371.5prime Sequence
995 bp (232 high quality bases) assembled on 2009-02-18
> UFO04371.5prime
CAATCCACATGTTGAAAAACATCTACGTAGCGCCGTTAAATTTGCTTAAA
TCGGCCACCAGCCTGCATCAGCAAGTGCGGACCACGTTCGTCCTGAACCG
CATATATGACCCGCCGCTGCACAAAACCAACGAGAAACCCCGCCGGATGA
GGGCCAAGAACTTCATCTACGAGCTCGTGGACGACACGCTGGTCAAAAAG
CGGCCCAACATCGAGGTGGTGCTAAAGACCTTCGTCGAGGGCGTTGGCGA
CAAGGGCGACGTGGTGTCAATGAAACCGCACTTTGTCTACAATAAGCTCC
TGCTGCCGGGTTTGGCCGCGTACAATACGCCGGAGAATGTGGCCAAGTAC
GCCAAGACAGAGGCTGAAAAATCGACTGTTAAACACAGCTCCCCCTACGC
CCAGCGCACGGTCAACATGCTGGAGACCATTGTGCTGGCGGTGGTCATGA
ACAAGGATGAACCATGGGTGCTCGAGCCCTGGCACATCAAGGCCTCGCTG
CGCAAGACTGGGTTCTATTGTCGCGAGGAGTGCATTACCCTGCCCAAGGA
GCGCATCGAGGGACCCGACCTGAAGAAGGAGAACAAGGACTTCTACTGCA
CTGTGACCATAAACAAGCTGGAACAGGCGCGACTCAAGTGTCGTCTGCAC
CACTGGAGCACAGATCCCAGCGAACGGCTGCCTTACGTACTCGAGCACTG
GAAACTCCAGTCTGAGCCCCTGCTGGATGTATGTTCACCCGAAAAAACCC
CTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCATGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACACTAGCCTATGAGATCC
TGTGCATGACTAGTGCTTGTATTCTCACCATTAAAAACGCCCGGCGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGATGTCATTACTGCTCTA
TCACATGAGTCCAAGCGAGCTCGATATTAATTACGCTCGACCTGC
UFO04371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL9-RA | 794 | CG31478-RA | 17..760 | 9..752 | 3615 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15330882..15331554 | 80..752 | 3305 | 99.4 | Plus |
| 3R | 32079331 | 3R | 15330754..15330825 | 9..80 | 315 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:55 has no hits.
UFO04371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:50 Download gff for
UFO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 15..758 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:12 Download gff for
UFO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 17..760 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:31 Download gff for
UFO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL9-RA | 17..760 | 9..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:31 Download gff for
UFO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15330754..15330825 | 9..80 | 95 | -> | Plus |
| 3R | 15330883..15331554 | 81..752 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:12 Download gff for
UFO04371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11156476..11156547 | 9..80 | 95 | -> | Plus |
| arm_3R | 11156605..11157276 | 81..752 | 99 | == | Plus |
