UFO04377.5prime Sequence
1114 bp (991 high quality bases) assembled on 2009-02-18
> UFO04377.5prime
CAGTCGACATGTCAGAACCAGAGCCAGATGTCAAGCCCAACATACTAATA
ACCGGAACTCCTGGAGCGGGGAAATCGTATTTATGCGAACGTATAGCCTC
CGAACTAAAGTTTGAGTGGCTGGACTGCTCCAAAATCGCCAAGGAGAAAA
ATTTTGTAGAGGAATATGACGAGGAGTACGATTGTCCCATTCTGGATGAA
GAAAAGCTGATGGATCACTTGGAGCCCCTGATGGCAAAGGGGGGCAACGT
CGTCGAGTATCATGGCTGTGATTTCTTTCCAGAGCGCTGGTTTCAAGCCG
TCTTCGTGGTAACCTGTCCCAATACAACACTCTACGATCGTCTGAAGGAG
CGCAACTACAACGAAAAGAAACTGGCATCCAATATTCAGTGCGAGATCTT
TGGAACCATTTTGGAAGAGGCCCGCGATTCCTACAAATCAGATATAGTAT
TCGAACTTAAGGGCGAAACAAAGGCAGATGCCCATATAAGCATAAAAACA
GTCAAAAACTGGTATCGTATGTGGAAAAGAAAAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAT
ATTTGCCCATGATGAAACGGGGGCGAGAGTTGTCATATTGGCCACGTTTA
AATCAAACTGTGAACTCCACCCAGGATTGGCTGAACGAAAACATATTCCT
CATAAACCCTTTAGGAAATAGCAGGTTCCACGTACACGCCCCAATCTTTG
GCGAATATATGTGTAGAACTGCGAATCGTCTGGATCACTCGAGGGATGAA
ACGTTCAGTTGTCT
UFO04377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ak6-RA | 711 | CG8816-RA | 122..646 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12569079..12569407 | 533..205 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 12569461..12569613 | 206..54 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 12569680..12569726 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:30 has no hits.
UFO04377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:40 Download gff for
UFO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8816-RA | 138..669 | 2..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:30 Download gff for
UFO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ak6-RA | 118..649 | 2..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:19 Download gff for
UFO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ak6-RA | 118..649 | 2..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:19 Download gff for
UFO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12569079..12569405 | 207..533 | 100 | <- | Minus |
| 2R | 12569461..12569612 | 55..206 | 100 | <- | Minus |
| 2R | 12569681..12569730 | 2..54 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:30 Download gff for
UFO04377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8456584..8456910 | 207..533 | 100 | <- | Minus |
| arm_2R | 8456966..8457117 | 55..206 | 100 | <- | Minus |
| arm_2R | 8457186..8457235 | 2..54 | 92 | | Minus |
