UFO04378.5prime Sequence
1145 bp (1018 high quality bases) assembled on 2009-02-18
> UFO04378.5prime
CAGTCGACATGGTGGAGACGGCAACGACAACGACCATAACCCGCACCACC
ACCGCCGTTCCGGCTGGTGCAGTAACGGTAACAGGACCCACTGCCTCGGC
CACGCCCACCGCGACACAGGCGGCCGCGCAGGCGCATCGCAACGATGAGA
CCACCCGGGCCATCTTCAATCTGAAAGTCATCGTCTTTCTGCTCCTCCTG
CCTCTGGTCCTGCTGGCCGTCTTTCTCAAGCACCTGTTGGATTACCTATT
CGCGCTGGGACTCAAGGAGAAGGATGTCAGTGGCAAGGTGGCACTGGTGA
CCGGCGGAGGCAGTGGGCTGGGTCGCGAGATCTGCTTGGAACTGGCGCGG
CGGGGCTGCAAGCTGGCCGTCGTTGATGTCAACTCCAAGGGATGTTACGA
AACGGTGGAGCTGCTCTCCAAGATTCCACGCTGCGTTGCCAAGGCCTACA
AGAACGACGTGTCATCGCCTCGCGAGCTTCAACTGATGGCCGCCAAGGTG
GAGAAGGAACTGGGTCCCGTGGACATTCTGGTCAACAATGCCTCCCTCAT
GCCCATGACTTCAACACCCAGTCTGAAGAGCGATGAAATCGACACAATAC
TGCAGCTCAATCTGGGCTCCTACATAATGACCACCAAGGAGTTCCTGCCG
AAGATGATAAACCGCAAGTCCGGTCATCTGGTGGCAGTAAATGCCTTAGC
GGGTCTAGTTCCACTGCCAGGAGCGGGCATCTACACGGCCACCAAATACG
GAATCGAGGGCTTCATGGAATCGCTGCGAGCTGAGCTGCGATTGTCCGAC
TGTGACTACGTTCGCACCACGGTGGCCAATGCCTATCTGATGAGGACCAG
CGGAGATCTTCCACTGCTCAGTGATGCGGGCATTGCCAGAGCTATCCCGG
ACTGCCCACACCATATGTGGCCGAGAGATTGTCAAGGGCGTGTTGCTGAA
CGAGCGCATGGTGTATGTGCCAAAATATTCCCAACTCAGTGTATGGCTGC
TCAGACTGGTGCCCACCAGTGGCGGAATTACATGCTGCTCGCTTCTACAT
TTCGATGTGCGCAACCTCCCACCTGGTTTTACTGGAAGGCAGCCTTTCTT
AACCATTTCGTTTGGCGGCGGGCCAGGTAAATGGTCTAAATCCAT
UFO04378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17121-RA | 1433 | CG17121-RA | 195..1277 | 9..1088 | 5115 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23047729..23048020 | 300..9 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 23045157..23045335 | 880..702 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045527..23045705 | 629..451 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23045762..23045918 | 452..296 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 23044973..23045090 | 1004..888 | 450 | 94.1 | Minus |
| 3R | 32079331 | 3R | 23045399..23045474 | 704..629 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:35 has no hits.
UFO04378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:39 Download gff for
UFO04378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 164..1254 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:52 Download gff for
UFO04378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 190..1280 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:12 Download gff for
UFO04378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17121-RA | 190..1280 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:12 Download gff for
UFO04378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23044973..23045098 | 881..1004 | 96 | <- | Minus |
| 3R | 23045157..23045334 | 703..880 | 100 | <- | Minus |
| 3R | 23045401..23045473 | 630..702 | 100 | <- | Minus |
| 3R | 23045527..23045703 | 453..629 | 100 | <- | Minus |
| 3R | 23045762..23045917 | 297..452 | 100 | <- | Minus |
| 3R | 23047733..23048024 | 1..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:52 Download gff for
UFO04378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18870695..18870820 | 881..1004 | 96 | <- | Minus |
| arm_3R | 18870879..18871056 | 703..880 | 100 | <- | Minus |
| arm_3R | 18871123..18871195 | 630..702 | 100 | <- | Minus |
| arm_3R | 18871249..18871425 | 453..629 | 100 | <- | Minus |
| arm_3R | 18871484..18871639 | 297..452 | 100 | <- | Minus |
| arm_3R | 18873455..18873746 | 1..296 | 98 | | Minus |
