UFO04380.5prime Sequence
1109 bp (960 high quality bases) assembled on 2009-02-18
> UFO04380.5prime
CAGTCGACATGATCGAGGTGCTGTGCCTGCTGCTGGGCAGGATCCTGCTG
CTCCTGGTCGGCGGCTACGAACTGATGTGGCGGCTCCGAGAGCGACTGAA
TGCACTGGCCGTCCGGTCATATGACCTTTGGCGCAGCAAAGCGGCACGTG
AGGCGCACGAGCGGCGCGTGCTCGCTGACTGCCGCTCCCAGTTGACGAAG
ACGCCGCAGCATCTGGTCCTGGTTATCTCCCCCGTAAATGCCGGCGTGGA
TGCGGTGCTCCTCAGCAGGATCTTCGACTTTGCCCTGGACGTGGGCATCA
AACACGTCAGCCTGTACGACAGGCGGACGAAAGGCAGGGGATACGTGGAC
ATGGCCGATCTCTGTCGATCCACCAACGCGGACACGGGCAGCTGCTTAAA
GTGGCCACCCGTAGCCAGTCCCAGCAAACTGGAGAACCAGCCCAAAAACG
GACAAAAGACAAATGGTTATGTGAACGGTTCACATTCCCCTCAACTGCAG
CTCCATCAAATCAACGCCTCCGACGGCCATGCCCTGATCGCCGACGTCTG
CCGCGAGTTGTACGAAGACAGTAAGACGGAGTTGGTGCAGAGCCTACTTA
AGCAGAAGCGCGAAGCGCTGACGGAGCAGATCAGCGACATGCTGAGCAAG
CGACTCGGGTTCGAGGCCCCGGAGCCGGAGCTGGGCATCGTGTTCGCCCG
GCAGACGTGCACCTACGGCCTGCTTCCCTGGCACGCGCGCTTCACCGAGT
TCCACACGCATCCCAGCGGACGCCACTTTCGACGTGGAGACGTTCGCCAG
CATCCTGTGCAAGTACTCGCGGTGCGAGCAGCGGTGGGGCACGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCTAGTAAGTGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGAATCCTGGTTCATG
ACTAGTGGCTTGATTCTCACCAATAAAAACCCCCCGGCGCAGCGTAGCGG
TCCGAACAATTCCCATGGGAGTTCCTGAGAGTCATTACTCGGATCTATCA
ACGAGGAGGTCAAGGGAGCTCGAATATCAATTTACGCCCCGCCCTGGCCA
CTCATCGCA
UFO04380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango14-RB | 1198 | CG4775-RB | 240..1075 | 7..843 | 4130 | 99.6 | Plus |
| Tango14-RA | 1272 | CG4775-RA | 314..1149 | 7..843 | 4130 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1158974..1159467 | 7..500 | 2455 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1159753..1160097 | 498..843 | 1665 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:53 has no hits.
UFO04380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:37 Download gff for
UFO04380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 292..1136 | 1..849 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:58 Download gff for
UFO04380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 310..1154 | 1..849 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:41 Download gff for
UFO04380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 310..1154 | 1..849 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:41 Download gff for
UFO04380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1158970..1159467 | 1..500 | 99 | -> | Plus |
| 2L | 1159756..1160102 | 501..849 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:58 Download gff for
UFO04380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1158970..1159467 | 1..500 | 99 | -> | Plus |
| arm_2L | 1159756..1160102 | 501..849 | 98 | == | Plus |
