UFO04382.5prime Sequence
1171 bp (1044 high quality bases) assembled on 2009-02-18
> UFO04382.5prime
CAGTCGACATGGCATCGATCTGTGGACGCATGGCGCTCCGTGCCGCCGCA
CGCCAGAATGTTGCCTACACGCCCGTGCGCTTCTGCAAAATGATGAACGA
TCCTTTGGAGCACGCCACTGGTATCGAGAAGCGCGAGCTGCTGCTTAAGG
CCGCCGGCAATGATAACCCCTTCGACATGAAGGTCTTCAAGCGGGGCGCC
GGCACCAAGGAGAACCCCAACCTTATTCCATCGGCCTTCGATGCTCGCAT
TGTGGGCTGCATCTGCGAAGAGGATCAGACCTACGTGCAATGGATGTGGC
TGCAGAAGGGCAACCAGAAACGTTGTGAGTGCGGCCATTGGTTCAAGCTG
GTGGAGAAGGCAGCTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGGAAATCGTCGGGTATTCACTCCAGAGC
GATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGGTGAACA
CTATCCCATATCACCCAGCTCACGGTCTTTTCATGGCCATACGAAAGTCC
GGATGAGCATTCATCAGGCGGCAGGATGTGATAAGGCGGAATAAACCTGG
TGCTATTTCTTACGGGCTTAAAAGGCGGTAATATCCAGCTGGAAGCGGGT
CGTGGGTTTATGGGATCACTA
UFO04382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVb-RB | 570 | CG11015-RB | 104..463 | 9..368 | 1800 | 100 | Plus |
| CoVb-RA | 729 | CG11015-RA | 104..463 | 9..368 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6558418..6558592 | 91..265 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 6558939..6559042 | 265..368 | 520 | 100 | Plus |
| 2L | 23513712 | 2L | 6557903..6557984 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 936..993 | 127 | 72.9 | Plus |
UFO04382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:43 Download gff for
UFO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11015-RA | 104..474 | 9..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:38 Download gff for
UFO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVb-RA | 104..474 | 9..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:48 Download gff for
UFO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVb-RA | 104..474 | 9..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:48 Download gff for
UFO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6557903..6557984 | 9..90 | 100 | -> | Plus |
| 2L | 6558418..6558591 | 91..264 | 100 | -> | Plus |
| 2L | 6558939..6559042 | 265..368 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:38 Download gff for
UFO04382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6557903..6557984 | 9..90 | 100 | -> | Plus |
| arm_2L | 6558418..6558591 | 91..264 | 100 | -> | Plus |
| arm_2L | 6558939..6559042 | 265..368 | 100 | == | Plus |
