UFO04383.5prime Sequence
1122 bp (1000 high quality bases) assembled on 2009-02-18
> UFO04383.5prime
CAGTCGACATGGCCCTTCGCTTGACCCAGAGATTGCTGCAGACGCAGACG
CCGTTCCTCACTCGCGGCTATCCCTTGCTGGTGACCAAGGAGAAGACCGA
GGATGTGGCCCACACCAAATCGGCGCTGCAGAAGAAAGTCACGGGCACCG
ATATTCCCTCGGCACAGTACGGAGGTCGTCATGCCGTCACCATGCTGCCG
GGCGGCGGCATTGGTCCTGAACTGATGGGCTATGTGCGCGAGATCTTCCG
GTATTGCGGTGCACCCATCGATTTCGAGGTGATCGACATCGATCCCTCCA
CCGAGGGCAACGATGATCTGGACTATGCCATCACATCGATTAAGAGGAAC
GGAGTGGCACTCAAGGGCAACATCGAGACCAAGTCCCAATCCTTGACCGA
AGTCTCCCGCAACGTGGCCATCCGTAACGAGCTGGATCTGTACGTCAATG
TGGTGCACTGCAAGTCGTATCCGGGCATTCCGGCCCGCCATCACGACATT
GACGTGGTGCTCATCCGCCAAAACACCGATGGCGAGTACGCCATGTTGGA
ACATGAGTCTGTGCCCGGAATTGTGGAGAGCATGAAAGTGGTGACCGTCG
AGAATGCCGAGCGTGTGGCCCGCTACGCCTTTGAGTTCGCCCGCCAAAAC
AATCGCAAGAAGGTTACCACCATTCACAAGGCCAACATCATGAAGCTGTC
CGATGGTCTCTTCCTGGAGGTTGCCAACCGTGTGCACAAGGACTATCCCG
AACTGGAGCACAACAACATGATTATCGACAACACCTGCATGCAGTCCGTG
TCGAATCCTCACCAGTTCGACGTGATGAACATGACCAATCTGTACGGCAC
CATCGTGTCCAATGTTCTTTGCGGTTTGATGGGCGGAGCTGGCCTCATAT
CCCGGCAGGAACTACGGTGACCATTACGCCATTTTTGGAGCCTGGCACCC
GTAACACCAGGAACCGCCATTGGCGGCAAGAAAAATCGCCAACCCTGGTG
GCCATGATCAGTGCCAGTATCGATATGTGACATTCTGGCCACAGGAGCAC
GCTATGTCATTCAGAGGCCGCCTACCAGACCAATTGTTAACGAATGCCAT
TCGTCACGCCGAATTATAGGCG
UFO04383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RD | 1742 | CG5028-RD | 122..1222 | 8..1110 | 5075 | 98 | Plus |
| CG5028-RC | 1608 | CG5028-RC | 122..1222 | 8..1110 | 5075 | 98 | Plus |
| CG5028-RB | 1934 | CG5028-RB | 122..1222 | 8..1110 | 5075 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25681265..25682045 | 143..924 | 3860 | 99.9 | Plus |
| 3R | 32079331 | 3R | 25681121..25681199 | 66..144 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 25680966..25681024 | 8..66 | 295 | 100 | Plus |
| 3R | 32079331 | 3R | 25682117..25682204 | 938..1028 | 275 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:54 has no hits.
UFO04383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:42 Download gff for
UFO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RC | 149..1256 | 8..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:36 Download gff for
UFO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1229 | 8..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:40 Download gff for
UFO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 122..1229 | 8..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:40 Download gff for
UFO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25681121..25681198 | 66..143 | 100 | -> | Plus |
| 3R | 25680966..25681023 | 8..65 | 100 | -> | Plus |
| 3R | 25681266..25682045 | 144..924 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:36 Download gff for
UFO04383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21506688..21506745 | 8..65 | 100 | -> | Plus |
| arm_3R | 21506843..21506920 | 66..143 | 100 | -> | Plus |
| arm_3R | 21506988..21507767 | 144..924 | 99 | -> | Plus |
