UFO04384.5prime Sequence
1045 bp (914 high quality bases) assembled on 2009-02-18
> UFO04384.5prime
CAGTCGACATGTTCTTGTCAACCGGCCGGAATTTCTTTCGTGTTTTCAGC
TCTCGCCAAATAGCAAGCTGCAGTGCTAGAATGGCAAGCGAAGTGGAAAA
ATCGCAAACGGCAGCCGCCAGTGAAGACACCATTTTCGGCAAGATTTTGC
GCAAGGAGATCCCATGCAAATTTATCCACGAGGATGATAAATGCGTTGCC
TTCCACGATGTGGCGCCCCAGGCACCAACCCACTTCCTCGTGATTCCTCG
CAAGCCAATTGCCCAACTCTCGCTAGCCGAGGATGGAGATGCCGATCTGC
TGGGACATCTCATGCTGGTGGGCCGCAAGGTGGCCAAGGAGCTCGGCCTC
GCGGATGGCTACCGCGTGGTCATCAACAATGGCAAGCACGGCGCCCAGTC
AGTTTACCACTTGCATTTGCACTTCCTCGGCGGCCGCCAGATGCAGTGGC
CACCAGGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCCATGATGAACCCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTAAAATATTTGCCCATGGTGAAACGGGG
CGAAGAAGTTGTCCATATTGGCTACGTTTAAATCAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAACGCGAAACATATTCTCCATAACCCTTTAAGGAA
TAGCAGGTTCACGTAACCCCGCCACATCTGCCATATTGTTAGACTGCGGA
TCGTCTGCATTCACTCGACGATGAAACGTTCAGTTTGTCTATGAA
UFO04384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2862-RC | 548 | CG2862-RC | 17..466 | 9..458 | 2250 | 100 | Plus |
| CG2862-RA | 644 | CG2862-RA | 17..466 | 9..458 | 2250 | 100 | Plus |
| CG2862-RB | 556 | CG2862-RB | 63..474 | 47..458 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2770460..2770726 | 192..458 | 1335 | 100 | Plus |
| 2L | 23513712 | 2L | 2770256..2770400 | 47..191 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 2770151..2770191 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:27 has no hits.
UFO04384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:41 Download gff for
UFO04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2862-RA | 12..468 | 4..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:47 Download gff for
UFO04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2862-RA | 14..470 | 4..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:04 Download gff for
UFO04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2862-RA | 14..470 | 4..463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:04 Download gff for
UFO04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2770148..2770191 | 4..49 | 95 | -> | Plus |
| 2L | 2770259..2770400 | 50..191 | 100 | -> | Plus |
| 2L | 2770460..2770726 | 192..458 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:47 Download gff for
UFO04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2770148..2770191 | 4..49 | 95 | -> | Plus |
| arm_2L | 2770259..2770400 | 50..191 | 100 | -> | Plus |
| arm_2L | 2770460..2770726 | 192..458 | 100 | == | Plus |
