UFO04385.5prime Sequence
659 bp (659 high quality bases) assembled on 2009-02-18
> UFO04385.5prime
CAGTCGACATGGAGCGTTGGATTGTCTTCGGTGTCTGCTGTTGGTGCTGG
CTGGCAGCATCCGCCCAGGCCTTGGAAAGTGTCTTTGGAGCCTACAATCT
GGAGCTGGAGTTTCCATCGCCGCAGGAAAGACAGCGCGCGCTGAGAGATG
GACTATACGATCCGGGCAGCGTGATCCCCATCGATGTGGACGTCTACTAC
AAGCATGGCGATGCCACACCCTCGATATTCGTGACCATTCCGCGTTTTGC
CTAGGGCGTTCCATACTCTCTGGCCTACGTCACAAACGAAATGCGACCGA
ACGGGACTCTCCTGCAGGCTTATCCCAGCTACGAGTGGCACAAATCCCAC
GGAGCCGACTGCAATGGATTGACTTCGGTGTACCGCACACAGATAGACGA
GTGCGGGCGCATGTGGATCCTGGACAGCGGCGAGATCGACTTCATTCAGC
ACTGCCCGCCGCAGCTGTACGCTATTGACTTGGAAAGCGGAAAAGTCGCG
CATCAGTACAAGATGCCCAAGCGATTGTACAAGGAGGGCGTGAGTCGCTT
TGTCACGCCCCACCGTGGAGCTGGATCCGCACAACTGCGATGTGGGATTC
GTGTACATGGCGGACTCCATTGGAGACGGCATTGTGGTGTATGACGTGGC
AACCCAGCA
UFO04385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d2-RA | 1341 | CG9891-RA | 62..712 | 8..659 | 3205 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23381509..23381962 | 205..659 | 2195 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23381258..23381454 | 8..204 | 985 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1743..1806 | 493..553 | 106 | 65.6 | Plus |
UFO04385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:35 Download gff for
UFO04385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 52..709 | 1..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:23 Download gff for
UFO04385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 54..711 | 1..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:07 Download gff for
UFO04385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 54..711 | 1..658 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:07 Download gff for
UFO04385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23381250..23381454 | 1..204 | 98 | -> | Plus |
| 2R | 23381509..23381961 | 205..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:23 Download gff for
UFO04385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19268773..19268977 | 1..204 | 98 | -> | Plus |
| arm_2R | 19269032..19269484 | 205..658 | 99 | | Plus |
