UFO04389.5prime Sequence
1087 bp (988 high quality bases) assembled on 2009-02-18
> UFO04389.5prime
CAGTCGACATGGCAGCCAGCGAGGGATCGGCGGCGCGCATTCAGTTCAAG
GCGCTGCGCGGATTTCCGGCCATCGGCGATACCGCTGATAAGCTGGAGAC
ACAGGCCTTTCTCGACGCCTCCAAGGAGATAGTAACCGTCATAGAGAGCT
TCGGCAAACTATTCACACCCGTGATCAGCGACATGAACGGAAACATAAAC
AAACTGACGAAAGCCTACGGAGCGGATGTGGTCAAGTACCAGTATCTGGA
GGATCTGATCGTGCTGAACGTGAACGTGGACGACTTTGCGGCCAACGCGC
TGCTCTGGCTGAAGCGCGGCCTGCAGCTCATATGCACCTTCTTCGAGAAC
ATCTACAACGATGCCCAGGCCAAGGAGGCACTTAAGCAGCATCTGCAGGA
CGCGTACGAACGCACATTGAAGCCCTACCACGGCTTCATCGTCCAGAGCA
CAATCAAGATCATCTACAGTTGGGTGCCCACGCGCAGCCAACTGCTGGGC
CAGGGTGTCGCCCAGGCGGAGAACATCGAGGTGCTGACCAGCTTCCTGCC
GCGTATGCGCGCCCATCTGGACTCGATCGACGCCCTGCTGAAGGCGCACA
ACTTGGACGATGCACGAAAGGTGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATCTGCGACATGAGCCATCACAAACGGCATGATGACCTGATCGC
AGCGCATCAGCACTGTCGCTTGCGTATATATTTGCCCATGTGAACGGGGG
CGAGAGTTGTCCTTATGCACGTTTATCAACTGTGACTCACCCAGAATGCT
GAACGAAAACATTTCTCATACTAGAATGGCAGGTTCA
UFO04389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6299-RE | 838 | CG6299-RE | 119..733 | 9..623 | 3075 | 100 | Plus |
| CG6299-RD | 1003 | CG6299-RD | 284..898 | 9..623 | 3075 | 100 | Plus |
| CG6299-RC | 987 | CG6299-RC | 273..887 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15466219..15466476 | 201..458 | 1290 | 100 | Plus |
| X | 23542271 | X | 15466541..15466707 | 457..623 | 835 | 100 | Plus |
| X | 23542271 | X | 15465858..15465993 | 9..144 | 680 | 100 | Plus |
| X | 23542271 | X | 15466067..15466124 | 143..200 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:56 has no hits.
UFO04389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:22 Download gff for
UFO04389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6299-RA | 288..908 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:03 Download gff for
UFO04389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6294-RA | 1826..2446 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:14 Download gff for
UFO04389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6299-RC | 267..887 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:14 Download gff for
UFO04389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15466543..15466712 | 459..629 | 97 | -> | Plus |
| X | 15465852..15465993 | 1..144 | 97 | -> | Plus |
| X | 15466069..15466124 | 145..200 | 100 | -> | Plus |
| X | 15466219..15466476 | 201..458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:03 Download gff for
UFO04389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15359885..15360026 | 1..144 | 97 | -> | Plus |
| arm_X | 15360102..15360157 | 145..200 | 100 | -> | Plus |
| arm_X | 15360252..15360509 | 201..458 | 100 | -> | Plus |
| arm_X | 15360576..15360745 | 459..629 | 97 | -> | Plus |
