UFO04390.5prime Sequence
1138 bp (1032 high quality bases) assembled on 2009-02-18
> UFO04390.5prime
CAGTCGACATGGAGAAGAACTTTCAATACGAGAATATGCAGCCTCAGGCT
CCGGGTTTCCAGGCACCGCCCAGTTATGATAGCGCACCGCAGCAGGTCTA
TCCTCAGCTCCATCAGGGACAGGGAGTGATATTGCAGGCTCCACCCAATG
TCCTGGGCCAATGTCCATCCGTTGCCACTTGTCCGAGCTGCGGCGTCCGC
AGGGAGACGAAGGTGGAGTTCGAGCCCAGCACCAAGACCCACCTGTTGGC
CCTACTCATCTGCATGCTGGGGGGCATTTGCTGCTGCTGCATTCCGTACT
GCACCGACTCCTGCCAGTCGGCCAAACACACCTGCACCAGCTGTGGAGCC
TACGTGGGCACCTACAAGAACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTG
CGAATATATGTGTAGAACTGCCGGAATCGTCGTGTATTCACTCCAGAGCG
ATGAAACGTTTCAGTTTGCCTCATGGAAAACGGTGTAACAGGGTGACACT
ATCCCATATCACCAGCTCACCGTCTTTCATTGCATACGAAATTCGATGAC
ATCATCAAGGCGGCAGATGTATAAGCCGATAAACTTGGGCTATTTTCTTA
CGCCTTAAGGCGTAATATCCAACGTACGCTGTAGTACT
UFO04390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 616 | CG4250-RA | 54..416 | 9..371 | 1815 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 222..455 | 138..371 | 1170 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 54..183 | 9..138 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22663988..22664122 | 138..272 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22663745..22663874 | 9..138 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 22664174..22664274 | 271..371 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:06:30 has no hits.
UFO04390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:21 Download gff for
UFO04390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 51..420 | 1..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:49 Download gff for
UFO04390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 47..416 | 1..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:48 Download gff for
UFO04390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 47..416 | 1..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:48 Download gff for
UFO04390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22663738..22663874 | 1..138 | 97 | -> | Plus |
| 2R | 22663989..22664121 | 139..271 | 100 | -> | Plus |
| 2R | 22664175..22664274 | 272..371 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:49 Download gff for
UFO04390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18551494..18551626 | 139..271 | 100 | -> | Plus |
| arm_2R | 18551680..18551779 | 272..371 | 100 | == | Plus |
| arm_2R | 18551243..18551379 | 1..138 | 97 | -> | Plus |
