UFO04391.5prime Sequence
1125 bp (1002 high quality bases) assembled on 2009-02-18
> UFO04391.5prime
CAGTCGACATGAACCCACTAGGAATGTTGAGCCTGGGCTTAATGGTGTGC
CTTATCGGCGCCTTCAGCCGGATTGCATCGGCCAAGCTGGAGGAGAAGTT
CTCGTGGAAGCAACTGGCCTTCGATTGGCCCACTCCGGAGGCCGAGGCGG
AGGCCAAGTCGAATGGCCACTACATCGTGGAGAACAACCTGCCGCTGGGC
GTGGAGCGTTGGCAAAACAGAATCTTTGTCACTGTGCCAAGATGGAAGGC
TGGTGTTGCTGCCACACTCAACTACATCGACATTAATTCGACGGAGAAGT
CGCCAAAGCTGCATCCGTATCCCAGTTGGGAGGCCAACAAGCTGCCCATC
GATGTGCAGCCACAGGACCAAAAGACACCATCCGGTGGACGTCTGGACGC
GGACAAGGCTCAAGATGCCGGCATCCAGCTGAAGGACAACTCCACTGTCA
TTTCCACCTTCCGAATTCAAGTCGACGTATGCGATCGCCTGTGGGTGCTC
GATACTGGCTTGGCCGACATCCTGGGCAGTCCCAAGCAGATTACGCCCAA
TTCAATCCTGGTTTTCGACTTGAAAACAGATACTTTACTGCGCCGTTTCA
CCATTCCCGCTGATCAGACCAAAGAGGACTCGTTCTTTGCGAATATTGTT
GTGGATGCGGACCGCTCGGAGTGCCAAGATGCCTTTGCTTACATTCCGGA
TTTGGGTGCCTACGGTGTGATTGTGTACTCCCTGAGGAACGACAAATCCT
ACCGCGTCAAGCACAACTTCTTCCACTTCGATCCTCTGCATGGTGATTTC
AATGTGGGCGGCGTGAACTTCCAGTGGACGGATGGCGTTTTTGGGCTGGC
CGTGGGCCCAATGAATCCAGATCACTCCAAGGACATTTATTTCCATGCCC
TGCCAGTACCAAGGAGTTCAAGGTTTCGAACCGCGTGCTGCAAACGATCA
CACGTGACCGCTGGCGATTCGTATTACGATTTTAAAAACGTGGTGACCGT
GGCCTGGATGGCCAGTCCACCCGCGAGGTCTTTGACCCGAGACCGGCGTC
ATCTTTCTATACGCAAGGTGAACAAAGACGCCAATTGCCTTGTTGAACAT
CAGCCGTTCATACACTTCCGGAACC
UFO04391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-c-RB | 1600 | CG4182-RB | 171..1285 | 9..1122 | 5205 | 98.3 | Plus |
| yellow-c-RA | 1522 | CG4182-RA | 93..1207 | 9..1122 | 5205 | 98.3 | Plus |
| CIAPIN1-RA | 2358 | CG4180-RA | 1712..2121 | 649..240 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15036584..15036993 | 240..649 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 15037051..15037521 | 648..1116 | 1795 | 95.4 | Plus |
| 2L | 23513712 | 2L | 15035564..15035796 | 9..241 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:27 has no hits.
UFO04391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:20 Download gff for
UFO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 94..1194 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:34 Download gff for
UFO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 93..1193 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:48 Download gff for
UFO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 93..1193 | 9..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:48 Download gff for
UFO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15035564..15035796 | 9..241 | 100 | -> | Plus |
| 2L | 15036586..15036991 | 242..647 | 100 | -> | Plus |
| 2L | 15037051..15037512 | 648..1107 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:34 Download gff for
UFO04391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15035564..15035796 | 9..241 | 100 | -> | Plus |
| arm_2L | 15036586..15036991 | 242..647 | 100 | -> | Plus |
| arm_2L | 15037051..15037512 | 648..1107 | 96 | | Plus |
