UFO04392.5prime Sequence
1091 bp (981 high quality bases) assembled on 2009-02-18
> UFO04392.5prime
CAGTCGACATGCTCGACAAATTCAACACAAACGCATTCATATCGTTTGGA
CTGGGATTCATACTGATGTGGCTGAGCGAAGCCACGGAAGCCCACATGAA
CTACACAGCCAAGCCGCGAGTAGTTCTTCCGCCTAATTATGTCAAGGAAA
TACGACCGCCCTCGAAGAAGGGCTCACCAGTGATAGTAGACTTTAGCATA
TTCGTTGTAGATATTAACTCAATTAACGTAGAGGATATGGACTTTAGAGT
AGACATGTTTATACATCAGCGCTGGCTGGAGTCGCGTCTGGAGATCCCAG
ATGACATATTCGAGGAGGGCGACGACTACGTGACGCTGCTTCCAGAGGTC
TTTGAGAATTTTTGGCAGCCGGATCCGTACTTTCTTAATTCCAAAATTGC
CGAAATAGCGACACTGACCCACAAGTTCACGTCGGTGACGCTCTACAAGA
ACAAAACGGTGCGCTATGCGGCCCGGATGCATGCGATCATCGCCTGCCAG
ATGGAGTTCCAGCTGTACCCCATGGACATCCAGGTGTGTCCCATCTACAT
CGAGAGCTTCTCGTCGAACAATCAAAAGGTTAAGCTGCGCTGGTCCGACT
CCGGGGTGACCCTCAATCCGGAACTGAAGCTGCTGCAGTACAATCTGGGC
CAGCCGCTGGAACTGGAGGAGAGCGACGGCTACATGCCGGAGAAGGTGGG
GAACTTCTCCCGCCTCACCGTATACTTCCGCTTCGAGCGCCAGATTGGCC
ACCACCTCATCCAGACCTTCGCCCCCTCATCGCTGGTGGTGATGCTGTCC
TGATTCAGCTTCTGGCTGGGACTGGACGCCATTCCGGGGCGCGTAACGCT
ACTGGTGACCTGCATGCTGACCCTGGTGACCATGTTTACGGCGCCGACAT
TCCGCCAGTGCTACGTTAAGCACTGGATCTTCTGGATGGCCGGTGCATGC
TGTCCGTGTTCGCCGCGCTGGCCGAGTTCGTGTGTGAAACTGCTGACGTG
CAGTACCAGTACCAGGTGACCGCATACTCAAGTACTGCCATGCCCATCAG
CATATGGAGAGGTCAGTGGTCGACGTGGCCAGTGAAGGCGA
UFO04392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-RC | 2731 | CG12344-RC | 155..1244 | 8..1083 | 4985 | 98 | Plus |
| CG12344-RA | 2843 | CG12344-RA | 267..1356 | 8..1083 | 4985 | 98 | Plus |
| CG12344-RD | 2719 | CG12344-RD | 155..1187 | 8..1032 | 4885 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10829394..10829746 | 910..559 | 1700 | 99.4 | Minus |
| 2R | 25286936 | 2R | 10829805..10829961 | 558..402 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10831378..10831534 | 402..246 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10831614..10831714 | 247..147 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 10833125..10833202 | 147..70 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 10833807..10833870 | 71..8 | 320 | 100 | Minus |
| 2R | 25286936 | 2R | 10829150..10829266 | 1032..920 | 280 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:42 has no hits.
UFO04392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:19 Download gff for
UFO04392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 261..1347 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:25 Download gff for
UFO04392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 261..1347 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:15 Download gff for
UFO04392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 261..1347 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:15 Download gff for
UFO04392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10829138..10829266 | 920..1042 | 92 | <- | Minus |
| 2R | 10829382..10829746 | 559..919 | 98 | <- | Minus |
| 2R | 10829805..10829960 | 403..558 | 100 | <- | Minus |
| 2R | 10831378..10831532 | 248..402 | 100 | <- | Minus |
| 2R | 10831614..10831713 | 148..247 | 100 | <- | Minus |
| 2R | 10833125..10833201 | 71..147 | 100 | <- | Minus |
| 2R | 10833808..10833873 | 1..70 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:25 Download gff for
UFO04392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6716643..6716771 | 920..1042 | 92 | <- | Minus |
| arm_2R | 6716887..6717251 | 559..919 | 98 | <- | Minus |
| arm_2R | 6717310..6717465 | 403..558 | 100 | <- | Minus |
| arm_2R | 6718883..6719037 | 248..402 | 100 | <- | Minus |
| arm_2R | 6719119..6719218 | 148..247 | 100 | <- | Minus |
| arm_2R | 6720630..6720706 | 71..147 | 100 | <- | Minus |
| arm_2R | 6721313..6721378 | 1..70 | 94 | | Minus |
