UFO04396.5prime Sequence
859 bp (-59 high quality bases) assembled on 2009-02-18
> UFO04396.5prime
CCCCCTTTGGATAGCATACATTATACGAAGTTATCAGTCGACATGTGGAC
AGATCTCGCGGGCAAGGTGATCTTGGTGACCGGAGCCGGGGCCGGTATTG
GCCAGGCGTTGGTCAAGCAGTTGGCCTCCGCGGGTGCCGCCGTCATCGCA
GTGGCCAGGAAGCCAGAGCAGCTCCAGCAGCTGGTGGCCTTCGATCCGGT
GCACATCCAGCCGCTGCAATTGGATCTCAGCGGCTGGCAGGCGGTGCGTG
AGGGGCTGGCGAAGGTGCCTCTGCTGGACGGTCTGGTCAACAACGCCGGC
TTGGCCATCATCAAGCCATTCGAGGAGCTCACCGAACAGGATTTCGACAC
CCACTTCGATGTGAACATCAAGGCGGTGTTCAATGTCACCCAATCTCTGC
TGCCCCGCTTGAAAGACGGAGCCTCAATTGTCAACGTGTCCTCGATAGCG
TCATCCCGATCCTTTGGCGGCCACACGGTCTACAGTGCCACCAAGGCGGC
CCTCGATTCGCTGACCAAGTCGCTGGCCGTTGGAGCTGGGTCCCGCGCAA
AATTCGCGTCAATTTCCGTTTAATCCCACCGTGGTGCTGATCAAAATTGG
GCGCCGACAATTGGTCGGTATCCCACCAAGAGTGGAACCGCTGGCTGGCC
CACATACCGCTGAATTCGGTTCTGCGAGGTGCAGGATGTGGGTGGACGCC
ACCGGCTATCTGCTGAGCAACAATCAAGCTTCCTGAACGGGCACCACATC
CTGCTCGAATGTGGATATTCCGTTCCGCAAGCTTCCAAGATCATTCGTTT
TGCCGCGCGGCGCCACGTAAGTGGTCATAATCCTATATTCATAATCAAAT
CTAAATCCA
UFO04396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7322-RC | 1183 | CG7322-RC | 382..1104 | 43..774 | 3225 | 97 | Plus |
| CG7322-RB | 877 | CG7322-RB | 76..798 | 43..774 | 3225 | 97 | Plus |
| CG7322-RA | 934 | CG7322-RA | 66..788 | 43..774 | 3225 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18857069..18857376 | 350..43 | 1510 | 99.4 | Minus |
| X | 23542271 | X | 18856019..18856437 | 774..347 | 1450 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:46 has no hits.
UFO04396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:35 Download gff for
UFO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7322-RA | 71..805 | 38..781 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:25 Download gff for
UFO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7322-RA | 61..795 | 38..781 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:34 Download gff for
UFO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7322-RA | 61..795 | 38..781 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:34 Download gff for
UFO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18856017..18856433 | 351..775 | 95 | <- | Minus |
| X | 18857069..18857381 | 38..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:25 Download gff for
UFO04396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18750050..18750466 | 351..775 | 95 | <- | Minus |
| arm_X | 18751102..18751414 | 38..350 | 98 | | Minus |
