UFO04401.5prime Sequence
1154 bp (1036 high quality bases) assembled on 2009-02-25
> UFO04401.5prime
CAGTCGACATGTCCCTGTTAAACAATGACGACAGCATTCCCAACATGGAC
GAGGATCCACAGGTGGTCATTCCGGACGACGAGCCACCGGCGACGGGACG
AATGCCCAGTGGGAGGTCCATGGACTCGTTGCGTTCATCGTTCACCAACC
GCAGTTCCACGCCAGATTCATCGCACAATTCGCTGGAGGCCATGGAAATG
GCCCAGGACGATCGGGAGGAGAAGGCCCGCCTCATCACACAGGTCCTGGA
GCTGCAGAACACCCTGGACGACCTGTCGCAACGCGTCGATTCCGTCAAGG
AGGAAAATCTGAAGCTGCGCTCCGAGAACCAGGTGCTCGGCCAGTACATC
GAGAACCTGATGTCGGCCTCATCGGTGTTCCAGTCCACCAGTCCCAGTGC
GGCCAAAAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGATATA
TGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAA
CGTTTCAGTTTGCTCATGAAAACGTGTACAGGGTGAACACTATTCCATAT
CAACAGCTCACGTCTTTTCATGCCATACCGAATCGGATGGACATCATCAG
GCGGGGCAAAATTTATAGCCGATAAACGTGGCTTATTTTCTTTAACGGAC
TTTA
UFO04401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5934-RA | 784 | CG5934-RA | 126..531 | 8..413 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27273962..27274312 | 63..413 | 1755 | 100 | Plus |
| 3R | 32079331 | 3R | 27273830..27273885 | 8..63 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:37 has no hits.
UFO04401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:27 Download gff for
UFO04401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5934-RA | 123..542 | 1..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:17 Download gff for
UFO04401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5934-RA | 122..541 | 1..425 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:43 Download gff for
UFO04401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5934-RA | 122..541 | 1..425 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:43 Download gff for
UFO04401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27273826..27273885 | 1..63 | 95 | -> | Plus |
| 3R | 27273963..27274312 | 64..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:17 Download gff for
UFO04401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23099548..23099607 | 1..63 | 95 | -> | Plus |
| arm_3R | 23099685..23100034 | 64..413 | 100 | == | Plus |
