UFO04402.5prime Sequence
1173 bp (999 high quality bases) assembled on 2009-02-25
> UFO04402.5prime
CAGTCGACATGCCATCGGGAAGAGTCAGAAAACCTAGAACCTCGCTCACT
TTGGAAGAGAAAATGGAGGTAATCCAGTCCCAGGAGCGAAACAAGCTATC
GGTTCGGGATCTGGCCAAGAGGTTTAACATTGGAAAGACACAAGCAGCAG
ACATTTTGAAGCACAAACAGTCGATTAAAGAGGGTCTGTTGAGTGGAGAA
CTTAAGTTGAATCAGATGCGGAGGAATCCCCTCTCTCAGCGGGGCGCCCA
AATCGATGAGATGTGCTTTGATTGGTTCTCCCGTGTCCGTACCGAGAATA
TACCCATATCGGGGGAAATGGTGCGGAAGAAGGCCAAGCAGTTAGCTGTG
GAGCTGGGCCACTCCAATTTCTCTGCCTCCTCCGGATGGCTGGAGAAATG
GCGAAAGCGACACAACGTCCGATACAATGACACCGGTGACAGCCTGGATC
TGCAGGAGTTCGAGGCGATTCTGGTGAAAAGCGAACCCATCTCGAATAAG
GACGATTGTGATGAGCCATACCCCGTGACTCTGATAGAGCCTATCTATTC
CACCGAGGAGGCCATGATGCAGCTGGCCCGGCTGAAGGAGTTCGCAAAGG
ATGACTATGCTTCCTACCAGCAGTTGATCAGTCTGGAAAATCAATGGAGC
TGGAAATGGAACATCTTTAAGAAGGAGCTTCCCGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCGACATGAAAGCATCACAAACGGCATGATG
ACTTGATCGCAGCGGCATCAGCACCTTGTTCGCCTTGCGTATAATATTTG
CCATGTGAAACGGGGCGAAGAAAGTTGTCTATTGCCGTTTAAATCAAACT
GGTGAAACTACCAAGATGCTGACCAAACATATTCCAATACTAGGAATGCA
GTTTCCCGTACGCCAACTCTGCA
UFO04402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..821 | 9..683 | 3375 | 100 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..1120 | 9..683 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893238..10893801 | 683..120 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:13 has no hits.
UFO04402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:26 Download gff for
UFO04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1066 | 9..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:39 Download gff for
UFO04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 9..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:28 Download gff for
UFO04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 9..683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:28 Download gff for
UFO04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893238..10893799 | 122..683 | 100 | <- | Minus |
| 2R | 10893857..10893969 | 9..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:39 Download gff for
UFO04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780743..6781304 | 122..683 | 100 | <- | Minus |
| arm_2R | 6781362..6781474 | 9..121 | 100 | | Minus |
