UFO04404.5prime Sequence
1154 bp (1055 high quality bases) assembled on 2009-02-25
> UFO04404.5prime
CAGTCGACATGGATGTTTGGGGATTCTGCGTCAGCGACACCACAATGGCA
TATGGCGGGTCCATGCGCAGCGGCTACTACCGCGACTACGAGGAGTTCCC
CTATGGTACCCTGGAGTCCACCACTTCCTCACACGCGGTCAAGGACTGCT
ACAGTCGAGTGCAAGAAAAGTGCAAGCAGATAAAGTCCGAGAAGCAGATG
CGCAAGGACTGCCCATTCTGCAAGGAGCACAAGAAGCGGCCGCTCATCAA
CTACATGCGCAAGCGGGAGCAAAGGAAGCACCATGACAGCATCTGCGAGG
ACGAGGAGGACATGCACGAGCACGAGCATGAGCTGGAGCACACCCACAAT
CACAGCCAGTCGACCGTCCTTGCCGCCCCGCAAAGCTGCAAGGTGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGA
AATCGTCGGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTTAACAAGGGTGAACACCTATCCATATCCCAGCTCACCGG
TCTTTCATTGCAACGAATCCGGAATGAACATTCTCAAGGCGGCCAGAAAG
GTGAATAAGGGCCGGATAACTTGGCCTTATTTCTTTACGGTCCTTATATA
GGCC
UFO04404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fok-RC | 1903 | CG43690-RC | 334..723 | 6..395 | 1950 | 100 | Plus |
| fok-RA | 1205 | CG43690-RA | 334..723 | 6..395 | 1950 | 100 | Plus |
| fok-RD | 696 | CG43690-RD | 334..493 | 6..165 | 800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20082786..20083017 | 395..164 | 1160 | 100 | Minus |
| 2L | 23513712 | 2L | 20084578..20084737 | 165..6 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:48 has no hits.
UFO04404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:24 Download gff for
UFO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fok-RA | 324..720 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:35 Download gff for
UFO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fok-RA | 327..723 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:34 Download gff for
UFO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fok-RA | 327..723 | 1..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:34 Download gff for
UFO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20082786..20083015 | 166..395 | 100 | <- | Minus |
| 2L | 20084578..20084739 | 1..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:35 Download gff for
UFO04404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20082786..20083015 | 166..395 | 100 | <- | Minus |
| arm_2L | 20084578..20084739 | 1..165 | 98 | | Minus |
