UFO04405.5prime Sequence
1126 bp (1036 high quality bases) assembled on 2009-02-25
> UFO04405.5prime
CAGTCGACATGATGAAATTGATGCTAGTCGTTGGCTCGATAGCCCTTCTC
CTGGCCCTGGCCAGTGCCCGGCCGCAAAATGATGTGGAAGTTCTTGAGTA
CGAATCGGAGAACACCGGCCTCGGCGGCTACAAGTTCAGCTACAAACTGA
GCGATGGCACCAGTCGAACAGAGGAGGGCGTGGTCAACAACGCGGGCACC
GACAACGAATCCATATCCATTCGGGGATCCGTCACCTGGGTGGCTCCCGA
TGGCCAAACCTACACCATTAACTTTGTGGCCGACGAGAACGGTTTTCAGC
CGGAGGGTGCCCATCTGCCCAAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACTCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAGGTGA
ACACTATCCCATATCACCAGCTCACCGTCTTTCATGGCATACGAAATTCC
GGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAGCGGATAAACTTG
TGGCTATTTTTCTTACGGTCTGAAAGCGTAAATCAGCTGAACGTTCTGAT
AGTAATTGACACTGACTGAATGCTCA
UFO04405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp65Aa-RA | 615 | CG10297-RA | 65..381 | 7..323 | 1585 | 100 | Plus |
| Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 228..320 | 195 | 80.6 | Plus |
| Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 249..322 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6152284..6152587 | 323..20 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 6139425..6139517 | 320..228 | 195 | 80.6 | Minus |
| 3L | 28110227 | 3L | 6143799..6143872 | 248..321 | 190 | 83.8 | Plus |
| 3L | 28110227 | 3L | 6145218..6145291 | 249..322 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:27 has no hits.
UFO04405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:23 Download gff for
UFO04405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 58..381 | 1..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:29 Download gff for
UFO04405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 58..381 | 1..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:22 Download gff for
UFO04405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 58..381 | 1..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:22 Download gff for
UFO04405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6152284..6152586 | 21..323 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:29 Download gff for
UFO04405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6145384..6145686 | 21..323 | 100 | <- | Minus |
