UFO04406.5prime Sequence
1110 bp (1026 high quality bases) assembled on 2009-02-25
> UFO04406.5prime
CAGTCGACATGGCGCTCCAAATAGCGCAGAACAACCGCGACGGCCAGCAG
CTGGTGGGCGCTGATCAGGGAAAGGTGGAGGTGTACGTGCTGTTTGCAAA
CACCACCTATCGCACCCTGGATCTGTACTGGGTGTGCGAGCGGGAGCGGG
AGAACATGTACCTTACCCTCAAGCCCTTCGAGGAGGTGCGGGTGAACACG
TTCACCACACACAGCTGGCTGTTCCGGGATTACTACACGGGCGAACGGAT
GCACGTACGCTCGCAGAGGATCTTTCAGCCGATTCGGGTGCGGGTACCCA
AGAGCCAGCAGAGTCCGGATCAGCTGGTTGACGTACGCAGCGAAGTGCTG
ATCCACTTTCCGATGAGATCGCTGCGCGAAAACTGCCTCTGGCTGGTCGC
CCGCTGGCTGATCCGGACGAGCAACGCGCCACGGAGGATTATCCACGGAT
ACCACATACCCTCGACGCTGAAGCAACAGCTGCTCAGCCTGCTGACCTGC
ATCGAGTCCTATTCCCGAGTGGCGGGCACGCGACGTCGGCGTGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATATATTTGCCCATGTGAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACCTCACCCAGGAATGCTGAAAC
GAAAAACATATTCTCAATAAACCCTTTAGAATAGCAGCTTTCACCGTAAC
ACGCCCACACTTGGCAATATTGTGAGAAACTGCGAATCTCTGAATCATCG
ACGATGAAAA
UFO04406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vhl-RB | 946 | CG13221-RB | 154..687 | 9..542 | 2670 | 100 | Plus |
| Vhl-RA | 1309 | CG13221-RA | 154..687 | 9..542 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279878..11280411 | 9..542 | 2670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:11 has no hits.
UFO04406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:23 Download gff for
UFO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 144..686 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:41 Download gff for
UFO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 145..687 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:06 Download gff for
UFO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vhl-RA | 145..687 | 1..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:06 Download gff for
UFO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11279869..11280411 | 1..542 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:41 Download gff for
UFO04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167374..7167916 | 1..542 | 99 | == | Plus |
