UFO04409.5prime Sequence
1137 bp (1034 high quality bases) assembled on 2009-02-25
> UFO04409.5prime
CAGTCGACATGGGCATTCCGGATATCCGACTGCTGGTGACGCTGGATTTC
GAGGTCTATGGACATGTACAAGGCCTGAATCTCACGAAAGACACCCGCGA
TCGCTGCACCAAGGCGGGAATCACTGGCTGGGTGAAGAACAGCAAACAGG
GCACCATTGTGGGCAAGATGCAGGGGCCCAAGGAGGAGGTGGACAAGATG
ATCACCTGGCTGTCCACTGAGGGCTCACCCGGCTGCCAAATCGATCGCTG
TGAGGTCCGGAACCAGGGCAATCTCAGCCGACTGGACTACAAGGACTTTG
CCATTAGGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTT
AGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTTCAGAGCGATGAA
AACGTTTCAGTTTGCTCATGGAAACGGTGTAACAAGGGTGAACACTTATC
CCATATCACCAGCCTCACCGTCTTTTATTGCCATACGAAAATTCCCGGAT
TGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGGATAAACTT
GTTGCTTTTTTTTCCTTACGGTCTTCAAGCCGTATATCCGACTGAACGCT
GGTATAGTACATTGGGCAACTGACTGGAATGCCCTCA
UFO04409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14022-RB | 617 | CG14022-RB | 207..514 | 4..311 | 1525 | 99.7 | Plus |
| CG14022-RA | 652 | CG14022-RA | 242..549 | 4..311 | 1525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5328252..5328381 | 200..71 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 5328078..5328189 | 311..200 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 5328569..5328638 | 73..4 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:08 has no hits.
UFO04409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:22 Download gff for
UFO04409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 230..540 | 1..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:39 Download gff for
UFO04409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 239..549 | 1..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:03 Download gff for
UFO04409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 239..549 | 1..311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:03 Download gff for
UFO04409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5328078..5328189 | 200..311 | 100 | <- | Minus |
| 2L | 5328253..5328379 | 73..199 | 100 | <- | Minus |
| 2L | 5328570..5328639 | 1..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:39 Download gff for
UFO04409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5328078..5328189 | 200..311 | 100 | <- | Minus |
| arm_2L | 5328253..5328379 | 73..199 | 100 | <- | Minus |
| arm_2L | 5328570..5328639 | 1..72 | 95 | | Minus |
