UFO04411.5prime Sequence
1090 bp (1012 high quality bases) assembled on 2009-02-25
> UFO04411.5prime
CAGTCGACATGCGAAGTCGCACGGAACTGGTGACCACCACTTTCGAGGAG
AGCGACGAGGATGATTTCAGTCCGGACGATTCCGACTCCGAGGAGGACTG
GCGACCCACCAAGAAACGTCCGTCCAAGCCATCTGGCTCCGATGGCGGCA
GGAAGCGGAAATCGGCGGCAGCCAATGCCTCGAAGGCCAAGCGCCGGATG
GCCAAGGTGAGCGACGAGGAGTCCGACGAAGAGGATGACCTAGAAACCGA
TCCCAGCGACGACGACTTTGACTACCCGTCGGCCAGCACTTCAAAGCGAC
CCCAGAGTCTGCCGCCCAAGAAGCAATTTGTTAAGTTAAGCCAACTGGAT
TTGCTGGTAAAAAAGTCTGATCTTATGGAAAACGACTGGCTAAAGAACAA
TCGCTTGTGTCTGTGGCGCAAAGATGAACAAACGAATCTGCTTCAGAAGT
ATCTGCGGGTCAAGTCGGCTGCCGAGGAGGAGGAGCTGCTCTTTACCTCC
AGTTCTGTATATTCCAGTTGGGATGATCAGCAGACGAGCGACTTCATAGA
GGTCAAAGTCAACTGCTTGGATCCCAACAACAGACGTATTAAACTGCACG
ATCTGGAGGCGATTAAGAAAATCTCCGTGGAACTACAATCAGAGCGAAAT
AAGAAAACGACATCGGACAAAGAAGATACTTTGGAGGCGGAGGAGGATAA
GCAAAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAGCGAGCTCGATATCAATTACGCCCCCG
CCCTGCCACCTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAACGGCATGATGAACCTTGAATCGCCAGCGGCATC
AGCACCTGGTCGCCCTTGCGAATAATATTTTGCCCATGAT
UFO04411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13108-RA | 1021 | CG13108-RA | 114..812 | 9..707 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9164348..9164848 | 9..509 | 2505 | 100 | Plus |
| 2L | 23513712 | 2L | 9165020..9165217 | 510..707 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:22 has no hits.
UFO04411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:29 Download gff for
UFO04411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 107..824 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:29 Download gff for
UFO04411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 107..824 | 1..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:47 Download gff for
UFO04411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13108-RA | 107..824 | 1..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:47 Download gff for
UFO04411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9164341..9164848 | 1..509 | 99 | -> | Plus |
| 2L | 9165020..9165229 | 510..718 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:29 Download gff for
UFO04411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9164341..9164848 | 1..509 | 99 | -> | Plus |
| arm_2L | 9165020..9165229 | 510..718 | 98 | == | Plus |
