UFO04412.5prime Sequence
813 bp (813 high quality bases) assembled on 2009-02-25
> UFO04412.5prime
CAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCTCGCTGGGC
CAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGCGCGCTCAC
GTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGCTATGGAGG
GACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTTTCAGCTTG
TTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTGCGGCTCAC
CAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGTTAAGGCCA
TCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCTTTTTCATG
GGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTGGAAGAGAC
GAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCATCTGGCCTA
TCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACCGCGTGGTG
TTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCGTACATGAA
GACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTGTACAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAAGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCAACCATAAAAAACGCCGGCGGCAACCGAG
CGTTCTGAACAAAATCCACATGGAGTTCTGAGGTCTTACTGGAACTATCA
ACAGGAAGTCCAA
UFO04412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14777-RF | 1474 | CG14777-RF | 809..1396 | 9..596 | 2925 | 99.8 | Plus |
| CG14777-RC | 799 | CG14777-RC | 134..721 | 9..596 | 2925 | 99.8 | Plus |
| CG14777-RE | 855 | CG14777-RE | 190..777 | 9..596 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1468445..1468614 | 427..596 | 835 | 99.4 | Plus |
| X | 23542271 | X | 1467811..1467965 | 9..163 | 775 | 100 | Plus |
| X | 23542271 | X | 1468249..1468384 | 295..430 | 680 | 100 | Plus |
| X | 23542271 | X | 1468052..1468186 | 163..297 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:37 has no hits.
UFO04412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:28 Download gff for
UFO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RC | 129..726 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:11 Download gff for
UFO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RD | 235..832 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:50 Download gff for
UFO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RE | 185..782 | 1..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:50 Download gff for
UFO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1467806..1467964 | 1..162 | 97 | -> | Plus |
| X | 1468052..1468185 | 163..296 | 100 | -> | Plus |
| X | 1468251..1468382 | 297..428 | 100 | -> | Plus |
| X | 1468447..1468619 | 429..604 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:11 Download gff for
UFO04412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1361839..1361997 | 1..162 | 97 | -> | Plus |
| arm_X | 1362085..1362218 | 163..296 | 100 | -> | Plus |
| arm_X | 1362284..1362415 | 297..428 | 100 | -> | Plus |
| arm_X | 1362480..1362652 | 429..604 | 97 | == | Plus |
