UFO04414.5prime Sequence
1160 bp (1044 high quality bases) assembled on 2009-02-25
> UFO04414.5prime
CAGTCGACATGCTCATGAGTCGAGCGCTTTGCCGGAGCTGGCTACCCCAG
GTGGCCCGCAGATGTCATGCTAATGTGAATGTGCCAATCCTGCGGATAAA
CTCTGGTCATCCGGCGGCGAGGTCATGTCGGCAGATTCACAGCAACCGAA
AACAGAGCAGCAACCTGAAGCCGACGACTGGGGAGCCTGCGGCAGCGGAG
CAGAACACCCCGGTGCCGGTGAACAATGTGATCAAGGCGGTGGCCTTCAC
GGGAGCATTTACGGTCGGCTGCTTTGCGGGTGCCACCATCCTGGAGTACG
AGAACACACGTAGCCTAATCCTAGAAAAGGCTCGCCAGGCGAGATTCGGT
TGGTGGCAGAGTCGTTCGCTGGCGGACAGGGATTACTGGACACAGATCAA
ACAAGACATCCGGCGGCACTGGGACTCACTGACACCCGGCGACAAGATGT
TTGCTCCTATCTTACTCTGCAATTTGGTGGCCTTCGCCATGTGGCGGGTG
CCCGCTCTGAAATCCACAATGATTACCTACTTCACATCCAATCCAGCGGC
GAAAGTCGTCTGCTGGCCCATGTTCCTGTCCACATTCAGCCATTACTCGG
CTATGCACCTTTTCGCCAATATGTACGTGATGCACAGCTTTGCCAACGCT
GCGGCTGTATCGTTGGGTAAAGAGCAATTCTTAGCGGTCTACCTCAGCGC
CGGCGTCTTCTCCAGTCTGATGAGCGTGCTCTACAAGGCGGCCACGAGTC
AGGCGGGGATGTCCCTGGGTGCGTCTGGAGCTATAATGACACTGCTGGCC
TATGTATGCACCCAGTATCCGGACACACAACTTAGCATTCTCTTTCTACC
CGCGTTGACATTCTCCGCTGGAGCTGGTATTAAAGTGCTAATGGGCATCG
ACTTTGCTGGCGTCGTGATGGGCTGGAAGTTCTTCGATCACGCAGCGCAT
TTGGGCGGCGCCATGTTTGGCATCTTTTGGGCCACGTATGGGGCACAGAT
ATGGGCAAAGCGCATTGGTCTACTGAATTACTACATGACCTGCGCGACGA
AGCAGAAAGCAGCTTTCTAGAACATCGTTGGCCGCGGTCCAGTAGTGGTC
ATATCTATCTAAATCTAATCATATCCAACTAGCTTAGTATCTGGATGACT
ATGGCTGAAT
UFO04414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-7-RB | 1533 | CG8972-RB | 119..1171 | 9..1058 | 5200 | 99.7 | Plus |
| rho-7-RA | 1328 | CG8972-RA | 119..1171 | 9..1058 | 5200 | 99.7 | Plus |
| CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 773..553 | 1105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11988002..11988296 | 552..258 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 11987281..11987501 | 773..553 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 11988362..11988563 | 257..56 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 11987027..11987227 | 973..773 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 11986875..11986962 | 1058..974 | 325 | 96.6 | Minus |
| 2R | 25286936 | 2R | 11988623..11988669 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:40 has no hits.
UFO04414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:19 Download gff for
UFO04414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 78..1143 | 1..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:26 Download gff for
UFO04414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 109..1174 | 1..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:33 Download gff for
UFO04414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 109..1174 | 1..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:33 Download gff for
UFO04414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11986872..11986962 | 974..1062 | 94 | <- | Minus |
| 2R | 11987027..11987226 | 774..973 | 100 | <- | Minus |
| 2R | 11987281..11987501 | 553..773 | 100 | <- | Minus |
| 2R | 11988002..11988296 | 258..552 | 100 | <- | Minus |
| 2R | 11988362..11988563 | 56..257 | 100 | <- | Minus |
| 2R | 11988623..11988678 | 1..55 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:26 Download gff for
UFO04414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7875867..7876068 | 56..257 | 100 | <- | Minus |
| arm_2R | 7876128..7876183 | 1..55 | 92 | | Minus |
| arm_2R | 7874377..7874467 | 974..1062 | 94 | <- | Minus |
| arm_2R | 7874532..7874731 | 774..973 | 100 | <- | Minus |
| arm_2R | 7874786..7875006 | 553..773 | 100 | <- | Minus |
| arm_2R | 7875507..7875801 | 258..552 | 100 | <- | Minus |
