UFO04419.5prime Sequence
1131 bp (1040 high quality bases) assembled on 2009-02-25
> UFO04419.5prime
CAGTCGACATGAAGGTTTTCGTTGCCATCTGCGTGCTGATTGGACTGGCC
TCCGCCGACTATGTGGTGAAGAACCGACACGACATGCTGGCCTACCGCGA
TGAGTGCGTCAAGGAGCTGGCCGTGCCCGTGGATCTGGTGGAGAAGTACC
AGAAGTGGGAGTACCCCAACGACGCCAAGACCCAGTGCTACATCAAGTGC
GTCTTCACCAAGTGGGGCCTGTTCGACGTCCAGAGCGGTTTCAACGTGGA
GAACATCCACCAACAGCTGGTGGGCAACCACGCTGACCACAACGAGGCCT
TCCACGCCTCCTTGGCCGCCTGCGTGGACAAGAACGAGCAGGGATCCAAT
GCCTGCGAGTGGGCCTACCGCGGAGCCACCTGTCTGCTGAAGGAGAACCT
GGCCCAGATCCAGAAGAGCCTGGCCCCGAAGGCCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGAAATCGTCGTGTAT
TCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAAAACGTGTACAA
GGGTGACACTATCCATATCACCCGCCTCACCCGTCTTTTCATTGCATACG
AATCCCGGATTGGACAAATCTTTAGGGGCGC
UFO04419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp99a-RB | 561 | CG18111-RB | 60..485 | 9..434 | 2130 | 100 | Plus |
| Obp99a-RA | 610 | CG18111-RA | 60..485 | 9..434 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29671822..29672209 | 47..434 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 29671716..29671755 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:34 has no hits.
UFO04419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:17 Download gff for
UFO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99a-RA | 49..482 | 1..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:08 Download gff for
UFO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99a-RA | 52..485 | 1..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:48 Download gff for
UFO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp99a-RA | 52..485 | 1..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:48 Download gff for
UFO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29671708..29671754 | 1..47 | 91 | -> | Plus |
| 3R | 29671823..29672209 | 48..434 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:08 Download gff for
UFO04419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25497430..25497476 | 1..47 | 91 | -> | Plus |
| arm_3R | 25497545..25497931 | 48..434 | 100 | == | Plus |
