UFO04420.5prime Sequence
1140 bp (1053 high quality bases) assembled on 2009-02-25
> UFO04420.5prime
CAGTCGACATGATAGCAATGGACGAGCAGCGCGGCGACAAGATCTACGGC
GGATGCGAGGGTCCGGACGCCATGTACGTGAAGCTGATTTCCTCGGACGG
CCACGAATTTGTCGTCAAACGCGAGCACGCTCTCACCTCCGGCACAATCC
GGGCGATGTTGTCCGGACCGGGTCAGTTTGCCGAGAACGAGGCCAACGAG
GTGCATTTCCGGGAGATACCATCCCACGTCCTACAAAAGGTCTGCATGTA
CTTCACCTATAAAGTGCGTTACACCAACAGTTCTACCGAAATACCCGAAT
TCCCGATCGCTCCGGAGATCGCATTAGAACTTTTGATGGCGGCTAATTTC
CTAGACTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGATATATGTGT
AGAAACTGCCGGAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTT
TCAGTTTGCCTCATGGAAAACGGTGTACAGGGTGAACACTATCCCATATC
ACCAGCTCACGTCTTTCATTGCCATACGAAATTCGGATGAGCATTCATCA
GGCGGCAAGAAATGTGGAATAGGCGGATAAACTTGTGGCTTATTTTTTCT
TTACGGTCTTGAAAGCCGTAATATAAGCTGACGCTGTTTA
UFO04420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloC-RB | 654 | CG9291-RB | 148..498 | 9..359 | 1755 | 100 | Plus |
| EloC-RA | 576 | CG9291-RA | 70..420 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19445928..19446139 | 220..9 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 19445241..19445379 | 359..221 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 924..981 | 118 | 71.2 | Plus |
UFO04420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:16 Download gff for
UFO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 60..415 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:06 Download gff for
UFO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 70..425 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:14 Download gff for
UFO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloC-RA | 70..425 | 9..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:14 Download gff for
UFO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19445241..19445379 | 221..359 | 100 | <- | Minus |
| 2R | 19445928..19446144 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:06 Download gff for
UFO04420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15332746..15332884 | 221..359 | 100 | <- | Minus |
| arm_2R | 15333433..15333649 | 1..220 | 98 | | Minus |
